Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angomonas_20deanei_20[genbank_20GCA_5F000442575.2_202013-07-31] 17,339 sequences; 34,103,807 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq13981 129 5e-25 seq16268 116 3e-21 seq15072 116 3e-21 seq11432 98.7 8e-16 >seq13981 Length=1966 Score = 129 bits (142), Expect = 5e-25 Identities = 278/409 (68%), Gaps = 10/409 (2%) Strand=Plus/Plus Query 20931 TCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTC 20990 || ||||| ||| |||| ||||||||||| || | |||||| || | || || || || Sbjct 202 TCCACGTGATTGCTGTAGACGTGGGCGTCCCCGAGGGTGTGTACCAGCTCCCCTGGCTTC 261 Query 20991 AGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGG 21050 | || ||| | || ||||| |||||| |||||||||||||| ||||||||||| Sbjct 262 AACCCAGTGCTCTTGGCAATCAGTATCGTCAGCAGGGCGTAGCTGGCAATGTTAAACGGT 321 Query 21051 ACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCC-----C 21105 ||||| || ||||| ||| | || || || ||| ||||||||||||| | Sbjct 322 ACCCCCAGCCCCATATCGCAGCTCCGTTGATAGAGCATGCAGGACAGCTCCTGCGTGTTG 381 Query 21106 GAG-CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC-CGCGCGAGGTC 21163 | | |||||| || ||| ||| | || || || ||||| |||||| | || || | Sbjct 382 GTGTTCACGTAGAATTGAGCCAACAGATGGCATGGTGGGAGGGCCATCTCATGC-AGCGC 440 Query 21164 CGCGGGGTTCCACG-CGCACATAACGATGCGCCGATCGTGGGGCCGCCTGTTAATTAGAT 21222 | ||||||||||| || | | | | || || | |||| ||| | || | | Sbjct 441 GGAGGGGTTCCACGCCGTAAACAGCAAT-CGTCTGTCGTTGGGGTTTGTCTTGAGGGTTT 499 Query 21223 CCACCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGT 21282 |||| | | | || || ||||||| || |||||||| | | | ||| Sbjct 500 CCACAATTTGCTTTATTTGATCGACCCCCTTTCCGTCGTAGTTTTCCTTGAAGGAGGTGT 559 Query 21283 ACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATC 21331 ||| || ||||| |||| |||||| |||||||||||||| || || || Sbjct 560 ACTTTGCACCAAAGTGTCGCCACTGAAACCCGTACACCGGGCCAAGGTC 608 >seq16268 Length=2759 Score = 116 bits (128), Expect = 3e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 20888 CGGAAACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTA 20947 |||||| | ||||| | || |||||| | | || | || ||||| ||| |||| Sbjct 511 CGGAAAGGCCCGCGGCACGCGCCTCAGCTGCTCCTGGAGCGCCTCCACGTGATTGCTGTA 452 Query 20948 AACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGC 21007 ||||||||||| || | |||||| || | || || || ||| || ||| | || Sbjct 451 GACGTGGGCGTCCCCGAGGGTGTGTACCAGCTCCCCTGGCTTCAACCCAGTGCTCTTGGC 392 Query 21008 GATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTC 21067 ||||| |||||| |||||||||||||| ||||||||||| ||||| || ||||| || Sbjct 391 AATCAGTATCGTCAGCAGGGCGTAGCTGGCAATGTTAAACGGTACCCCCAGCCCCATATC 332 Query 21068 GGCGGACCTCTGGTACAGCTGGCAGGACAGCTCC 21101 | | || || || ||| ||||||||||||| Sbjct 331 GCAGCTCCGTTGATAGAGCATGCAGGACAGCTCC 298 >seq15072 Length=876 Score = 116 bits (128), Expect = 3e-21 Identities = 207/298 (69%), Gaps = 8/298 (3%) Strand=Plus/Minus Query 20888 CGGAAACGGACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTA 20947 |||||| | ||||| | || |||||| | | || | || ||||| ||| |||| Sbjct 478 CGGAAAGGCCCGCGGCACGCGCCTCAGCTGCTCCTGGAGCGCCTCCACGTGATTGCTGTA 419 Query 20948 AACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGC 21007 ||||||||||| || | |||||| || | || || || ||| || ||| | || Sbjct 418 GACGTGGGCGTCCCCGAGGGTGTGTACCAGCTCCCCTGGCTTCAACCCAGTGCTCTTGGC 359 Query 21008 GATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTC 21067 ||||| |||||| |||||||||||||| ||||||||||| ||||| || ||||| || Sbjct 358 AATCAGTATCGTCAGCAGGGCGTAGCTGGCAATGTTAAACGGTACCCCCAGCCCCATATC 299 Query 21068 GGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCC-----CGAG-CCACGTAAAACTG 21121 | | || || || ||| ||||||||||||| | | | |||||| || || Sbjct 298 GCAGCTCCGTTGATAGAGCATGCAGGACAGCTCCTGCGTGTTGGTGTTCACGTAGAATTG 239 Query 21122 ACACAAAACGTGACAAGGAGGGAGAGCCATC-CGCGCGAGGTCCGCGGGGTTCCACGC 21178 | || | || || || ||||| |||||| | || || | | |||||||||||| Sbjct 238 AGCCAGCAGATGGCATGGTGGGAGGGCCATCTCATGC-AGCGCGGAGGGGTTCCACGC 182 >seq11432 Length=1600 Score = 98.7 bits (108), Expect = 8e-16 Identities = 226/334 (68%), Gaps = 10/334 (3%) Strand=Plus/Minus Query 21006 GCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATG 21065 || ||||| |||||| |||||||||||||| ||||||||||| ||||| || ||||| Sbjct 1573 GCAATCAGTATCGTCAGCAGGGCGTAGCTGGCAATGTTAAACGGTACCCCCAGCCCCATA 1514 Query 21066 TCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCC-----CGAG-CCACGTAAAAC 21119 ||| | || || || ||| ||||||||||||| | | | |||||| || Sbjct 1513 TCGCAGCTCCGTTGATAGAGCATGCAGGACAGCTCCTGCGTGTTGGTGTTCACGTAGAAT 1454 Query 21120 TGACACAAAACGTGACAAGGAGGGAGAGCCATC-CGCGCGAGGTCCGCGGGGTTCCACG- 21177 ||| ||| | || || || ||||| |||||| | || || | | ||||||||||| Sbjct 1453 TGAGCCAACAGATGGCATGGTGGGAGGGCCATCTCATGC-AGCGCGGAGGGGTTCCACGC 1395 Query 21178 CGCACATAACGATGCGCCGATCGTGGGGCCGCCTGTTAATTAGATCCACCACGTAACGCA 21237 || | | | | || || | |||| ||| | || | ||||| | | | Sbjct 1394 CGTAAACAGCAAT-CGTCTGTCGTTGGGGTTTGTCTTGAGGGTTTCCACAATTTGCTTTA 1336 Query 21238 GCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAAT 21297 || || ||||||| || |||||||| | | | |||||| || ||||| | Sbjct 1335 TTTGATCGACCCCCTTTCCGTCGTAGTTTTCCTTGAAGGAGGTGTACTTTGCACCAAAGT 1276 Query 21298 GTCTCCACTGGAACCCGTACACCGGCCCCAGATC 21331 ||| |||||| |||||||||||||| || || || Sbjct 1275 GTCGCCACTGAAACCCGTACACCGGGCCAAGGTC 1242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427685602776720