Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angomonas_20deanei_20[genbank_20GCA_5F000442575.2_202013-07-31] 17,339 sequences; 34,103,807 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq15380 93.3 5e-14 seq10209 93.3 5e-14 seq6928 93.3 5e-14 >seq15380 Length=3290 Score = 93.3 bits (102), Expect = 5e-14 Identities = 188/279 (67%), Gaps = 0/279 (0%) Strand=Plus/Minus Query 63043 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 63102 ||||| || ||||| ||| || ||||| || || ||||| |||||||||||||||||||| Sbjct 1029 CATCAGCGTCCACTGTCCCTCCTCCTTGACACGCTTCATGAAGAGATCAGGAATCCAAAG 970 Query 63103 AGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63162 || ||| ||||| | || | || ||||| || || || || || || || Sbjct 969 GGCGTAAAACAGATCGCGGGCACGTTGGTCCTCCTTACCGGTGTTTCGCTTCAGGCGGAC 910 Query 63163 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTT 63222 |||| | | | || | |||||||| || | ||| | ||| | | || || || Sbjct 909 GAACTCGAACACGTCGGCGTGCCACGGCTCGAGGTACACGGCGAAGGCACCCTTACGCTT 850 Query 63223 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 63282 || ||||| || | ||| | ||||||||||| | || | | ||| || | | Sbjct 849 ACCGCCACCCTGGTCCACGTAGCGGGCGGTGTTATTGAACACACGGAGCATGGGCACGAG 790 Query 63283 ACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCC 63321 ||| ||||| ||||| || || || | ||| || || || Sbjct 789 ACCGTTGGAGGTACCGTTCGTACCGGCGATGTAACTACC 751 >seq10209 Length=2565 Score = 93.3 bits (102), Expect = 5e-14 Identities = 188/279 (67%), Gaps = 0/279 (0%) Strand=Plus/Minus Query 63043 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 63102 ||||| || ||||| ||| || ||||| || || ||||| |||||||||||||||||||| Sbjct 1202 CATCAGCGTCCACTGTCCCTCCTCCTTGACACGCTTCATGAAGAGATCAGGAATCCAAAG 1143 Query 63103 AGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63162 || ||| ||||| | || | || ||||| || || || || || || || Sbjct 1142 GGCGTAAAACAGATCGCGGGCACGTTGGTCCTCCTTACCGGTGTTTCGCTTCAGGCGGAC 1083 Query 63163 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTT 63222 |||| | | | || | |||||||| || | ||| | ||| | | || || || Sbjct 1082 GAACTCGAACACGTCGGCGTGCCACGGCTCGAGGTACACGGCGAAGGCACCCTTACGCTT 1023 Query 63223 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 63282 || ||||| || | ||| | ||||||||||| | || | | ||| || | | Sbjct 1022 ACCGCCACCCTGGTCCACGTAGCGGGCGGTGTTATTGAACACACGGAGCATGGGCACGAG 963 Query 63283 ACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCC 63321 ||| ||||| ||||| || || || | ||| || || || Sbjct 962 ACCGTTGGAGGTACCGTTCGTACCGGCGATGTAACTACC 924 >seq6928 Length=4025 Score = 93.3 bits (102), Expect = 5e-14 Identities = 188/279 (67%), Gaps = 0/279 (0%) Strand=Plus/Plus Query 63043 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 63102 ||||| || ||||| ||| || ||||| || || ||||| |||||||||||||||||||| Sbjct 2159 CATCAGCGTCCACTGTCCCTCCTCCTTGACACGCTTCATGAAGAGATCAGGAATCCAAAG 2218 Query 63103 AGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63162 || ||| ||||| | || | || ||||| || || || || || || || Sbjct 2219 GGCGTAAAACAGATCGCGGGCACGTTGGTCCTCCTTACCGGTGTTTCGCTTCAGGCGGAC 2278 Query 63163 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTT 63222 |||| | | | || | |||||||| || | ||| | ||| | | || || || Sbjct 2279 GAACTCGAACACGTCGGCGTGCCACGGCTCGAGGTACACGGCGAAGGCACCCTTACGCTT 2338 Query 63223 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 63282 || ||||| || | ||| | ||||||||||| | || | | ||| || | | Sbjct 2339 ACCGCCACCCTGGTCCACGTAGCGGGCGGTGTTATTGAACACACGGAGCATGGGCACGAG 2398 Query 63283 ACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCC 63321 ||| ||||| ||||| || || || | ||| || || || Sbjct 2399 ACCGTTGGAGGTACCGTTCGTACCGGCGATGTAACTACC 2437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633494668184400