Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angomonas_20deanei_20[genbank_20GCA_5F000442575.2_202013-07-31] 17,339 sequences; 34,103,807 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq13355 132 3e-25 >seq13355 Length=2242 Score = 132 bits (146), Expect = 3e-25 Identities = 143/186 (77%), Gaps = 4/186 (2%) Strand=Plus/Minus Query 474689 AAAATGAAACAAACCGC-GAGCTCATATCTTGGAC-AAGAAGTAACTGATGCAGTAATTA 474746 |||||||| |||| || ||| || ||||| |||||||||||||||| || || | Sbjct 987 AAAATGAAGAAAACAGCTGAGG--ATTACTTGGGTGAAGAAGTAACTGATGCTGTTATAA 930 Query 474747 CTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTG 474806 | || || || |||||||||||| |||| | || |||||||||||||| |||| ||||| Sbjct 929 CAGTGCCTGCTTATTTTAATGATAGTCAAAGACAGGCAACTAAAGATGCTGGAAAAATTG 870 Query 474807 CAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTC 474866 ||||| | ||||| | | || |||||||| ||||| || || ||| | || | ||||| Sbjct 869 CAGGTTTAAATGTAAAAAGAATAATTAATGAGCCAACTGCTGCTGCATTGGCATTTGGTC 810 Query 474867 TTGATA 474872 | |||| Sbjct 809 TAGATA 804 Score = 120 bits (132), Expect = 2e-21 Identities = 105/131 (80%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 290825 AGACCATATGTTAATGAAGCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGACCT 290884 |||||| ||| |||| ||| || ||||| ||||| || |||||| ||||| | |||| Sbjct 809 AGACCAAATGCCAATGCAGCAGCAGTTGGCTCATTAATTATTCTTTTTACATTTAAACCT 868 Query 290885 GCAATTTTTGCCGAATCTAAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGACT 290944 ||||||||| | | |||| ||||||||| | ||| |||||||||||||||||| ||| Sbjct 869 GCAATTTTTCCAGCATCTTTAGTTGCCTGTCTTTGACTATCATTAAAATAAGCAGGCACT 928 Query 290945 GTAATAACAGC 290955 || |||||||| Sbjct 929 GTTATAACAGC 939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267435446161172