Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angomonas_20deanei_20[genbank_20GCA_5F000442575.2_202013-07-31] 17,339 sequences; 34,103,807 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq15740 98.7 2e-15 seq7780 98.7 2e-15 seq6241 98.7 2e-15 seq6220 98.7 2e-15 >seq15740 Length=2267 Score = 98.7 bits (108), Expect = 2e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || || || || | |||||| || || || ||||| || || || || | Sbjct 1834 TACCGCCACGCAGGCGGAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCG 1893 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | || || || || || || ||||| || || || | || || || |||| Sbjct 1894 CGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCGAAAATGAGGCGCTGCTGGTCAGGAG 1953 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || || ||||| || || || || || ||||| || | | || | Sbjct 1954 GAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCA 2013 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | | ||||||||||| |||| |||||| || || |||||||| Sbjct 2014 CCTCGAGGGCAATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 2062 Score = 91.5 bits (100), Expect = 3e-13 Identities = 159/230 (69%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || || || || | |||||| || || || ||||| || || || || | Sbjct 1605 TACCGCCACGCAGGCGGAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCG 1664 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | || || || || || || ||||| || || || | || || || |||| Sbjct 1665 CGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCGAAAATGAGGCGCTGCTGGTCAGGAG 1724 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || || ||||| || || || || || ||||| || | | || | Sbjct 1725 GAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCA 1784 Query 82762 CTTCCAAAGTTA-TCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | | | |||||||||| |||| |||||| || || |||||||| Sbjct 1785 CCTCGGAGGGCAATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1834 >seq7780 Length=1467 Score = 98.7 bits (108), Expect = 2e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || || || || | |||||| || || || ||||| || || || || | Sbjct 370 TACCGCCGCGCAGGCGGAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCG 311 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | || || || || || || ||||| || || || | || || || |||| Sbjct 310 CGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCGAAAATGAGGCGCTGCTGGTCAGGAG 251 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || || ||||| || || || || || ||||| || | | || | Sbjct 250 GAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCA 191 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | | ||||||||||| |||| |||||| || || |||||||| Sbjct 190 CCTCGAGGGCAATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 142 Score = 98.7 bits (108), Expect = 2e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || || || || | |||||| || || || ||||| || || || || | Sbjct 827 TACCGCCACGCAGGCGGAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCG 768 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | || || || || || || ||||| || || || | || || || |||| Sbjct 767 CGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCGAAAATGAGGCGCTGCTGGTCAGGAG 708 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || || ||||| || || || || || ||||| || | | || | Sbjct 707 GAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCA 648 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | | ||||||||||| |||| |||||| || || |||||||| Sbjct 647 CCTCGAGGGCAATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 599 Score = 91.5 bits (100), Expect = 3e-13 Identities = 159/230 (69%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || || || || | |||||| || || || ||||| || || || || | Sbjct 599 TACCGCCACGCAGGCGGAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCG 540 Query 82642 ATAGAATTCTA-CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGA 82700 || | | || || || || || || ||||| || || || | || || || ||| Sbjct 539 CGAGCGTGCCGGCCCTCCTCCAGCTGCTTGCCAGCGAAAATGAGGCGCTGCTGGTCAGGA 480 Query 82701 GGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCT 82760 || || || ||||| || || ||||| || || || || || ||||| || | | || Sbjct 479 GGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCC 420 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || | | ||||||||||| |||| |||||| || || |||||||| Sbjct 419 ACCTCGAGGGCAATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 370 >seq6241 Length=2159 Score = 98.7 bits (108), Expect = 2e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || || || || | |||||| || || || ||||| || || || || | Sbjct 1676 TACCGCCACGCAGGCGGAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCG 1735 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | || || || || || || ||||| || || || | || || || |||| Sbjct 1736 CGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCGAAAATGAGGCGCTGCTGGTCAGGAG 1795 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || || ||||| || || || || || ||||| || | | || | Sbjct 1796 GAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCA 1855 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | | ||||||||||| |||| |||||| || || |||||||| Sbjct 1856 CCTCGAGGGCAATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 1904 Score = 91.5 bits (100), Expect = 3e-13 Identities = 159/230 (69%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || || || || | |||||| || || || ||||| || || || || | Sbjct 1904 TACCGCCGCGCAGGCGGAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCG 1963 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | || || || || || || ||||| || || || | || || || |||| Sbjct 1964 CGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCAGGAG 2023 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || || ||||| || || || || || ||||| || | | || | Sbjct 2024 GAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCA 2083 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCT-GCAT 82810 | || | | ||||||||||| |||| |||||| || || |||| |||| Sbjct 2084 CCTCGAGGGCAATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTAGCAT 2133 >seq6220 Length=1461 Score = 98.7 bits (108), Expect = 2e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || || || || | |||||| || || || ||||| || || || || | Sbjct 587 TACCGCCGCGCAGGCGGAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCG 646 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | || || || || || || ||||| || || || | || || || |||| Sbjct 647 CGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCGAAAATGAGGCGCTGCTGGTCAGGAG 706 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || || ||||| || || || || || ||||| || | | || | Sbjct 707 GAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCA 766 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | | ||||||||||| || || ||||| ||||| |||||||| Sbjct 767 CCTCGAGGGCAATCGTCTTGCCGGTTAAAGTCTTCACAAAAATCTGCAT 815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981609081257921