Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angomonas_20deanei_20[genbank_20GCA_5F000482225.1_202013-10-25] 5,616 sequences; 23,079,371 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1 104 2e-17 seq1880 91.5 1e-13 seq5372 87.8 2e-12 seq4543 87.8 2e-12 seq4373 82.4 8e-11 >seq1 Length=157016 Score = 104 bits (114), Expect = 2e-17 Identities = 311/476 (65%), Gaps = 17/476 (4%) Strand=Plus/Plus Query 153919 CGTTGGGACACATCAGTGACCATCGGCCATTTTCTTGAACGCGACGCATAAATATATCGG 153978 ||||||| |||||| | ||| | || | || | || || ||| || | ||| | Sbjct 22957 CGTTGGGGTCCATCAGCGTCCACTGTCCCTCCTCCTTGACACGCTTCATGAAGAGATCAG 23016 Query 153979 GAACCCATAGGGCGTTCATCAGGTCGCGCGCTTTCGT--GTCTTCGCTGCCAATGTTTCG 154036 ||| ||| ||||||| | ||| ||||| || ||| ||| || | || ||||||| Sbjct 23017 GAATCCAAAGGGCGTAAAACAGATCGCGGGCA--CGTTGGTCCTCCTTACCGGTGTTTCG 23074 Query 154037 ACGCATGTGTAAGACGTCCATTATGTCGCAATGCCACGGTTCCACGTAAACTGCTTGAGC 154096 || | | | || || | | |||| |||||||| || | ||| || || || Sbjct 23075 CTTCAGGCGGACGAACTCGAACACGTCGGCGTGCCACGGCTCGAGGTACACGGCGAAGGC 23134 Query 154097 GCCTTTACGCTTGCCGCC---CTGATTTACGTGACGCACCATATTGTTGAAAACCCGAAG 154153 || |||||||| ||||| ||| | |||| || | | || ||||| || || || Sbjct 23135 ACCCTTACGCTTACCGCCACCCTGGTCCACGTAGCGGGCGGTGTTATTGAACACACGGAG 23194 Query 154154 CATGGGTAGCAGACCGCTGGCGGTACCGTTTGTA-----GATTTAATCTTGCTGTTGCGG 154208 |||||| | |||||| ||| ||||||||| ||| ||| ||| || | | | | Sbjct 23195 CATGGGCACGAGACCGTTGGAGGTACCGTTCGTACCGGCGATGTAA-CTACCGGAAGAG- 23252 Query 154209 CCTCGAACGCTGTTTACGTTTAATCCAATACCGCCGCCGTGTTTGGAGATCATGGCGCAA 154268 || | | ||| |||| || |||||||| ||| | || ||| ||||||| Sbjct 23253 ---CGGATGTTGTGAACGTGGAACCCAATACCACCGGCCGCCTTACTGATGGTGGCGCAC 23309 Query 154269 TCGTTCAATGTGTTATAGATACCACGAATGCTATCGCTTTCCATGGTCAATAGGAAACAT 154328 || || | |||| || || ||| || || ||| | ||||| || ||||| || Sbjct 23310 TCCTTGAGGGTGTCGTAAATGCCATCGATACTGTCGTCCTTCATGGCCACGAGGAAGCAG 23369 Query 154329 GAACTCATCTGCGGAGTTGGAGTGCCGGCAGCAAACATGGTCGGGCTTGCGTGCGT 154384 ||||||||||| || | || || ||||| |||| ||| ||| | ||||| || Sbjct 23370 GAACTCATCTGAGGCTTCGGGGTACCGGCGTTGAACAGGGTAGGGGTGGCGTGGGT 23425 >seq1880 Length=2433 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | || | || | ||| | ||| ||||| || || ||||| || || Sbjct 2203 CCGCCACGCAGGCGGAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 2262 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || ||||| || ||||| | || ||||| ||||| || ||||| Sbjct 2263 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCAGGAGGA 2322 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || ||||| ||| || || | | || | |||||| | | ||||||| Sbjct 2323 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACC 2382 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | |||||||||||||| ||| || ||||| || |||||| Sbjct 2383 TCGAGGGCAATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATA 2430 >seq5372 Length=561 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | || | || | ||| | ||| ||||| || || ||||| || || Sbjct 45 CCGCCACGCAGGCGGAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 104 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || ||||| || ||||| | || || || ||||| || ||||| Sbjct 105 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCGAAAATGAGGCGCTGCTGGTCAGGAGGA 164 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || ||||| ||| || || | | || | |||||| | | ||||||| Sbjct 165 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACC 224 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | |||||||||||||| ||| || ||||| || |||||| Sbjct 225 TCGAGGGCAATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATA 272 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | || | || | ||| | ||| ||||| || || ||||| || || Sbjct 273 CCGCCACGCAGGCGGAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 332 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || ||||| || ||||| | || || || ||||| || ||||| Sbjct 333 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCGAAAATGAGGCGCTGCTGGTCAGGAGGA 392 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || ||||| ||| || || | | || | |||||| | | ||||||| Sbjct 393 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACC 452 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | |||||||||||||| ||| || ||||| || |||||| Sbjct 453 TCGAGGGCAATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATA 500 >seq4543 Length=829 Score = 87.8 bits (96), Expect = 2e-12 Identities = 155/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | || | || | ||| | ||| ||||| || || ||||| || || Sbjct 604 CCGCCACGCAGGCGGAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 663 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || ||||| || ||||| | || ||||| ||||| || ||||| Sbjct 664 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCAGGAGGA 723 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || ||||| ||| || || | | || | |||||| | | ||||||| Sbjct 724 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACC 783 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCA 139763 || | || | |||||||||||||| ||| || ||||| || |||| Sbjct 784 TCGAGGGCAATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCA 829 >seq4373 Length=891 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | || | || | ||| | ||| ||||| || || ||||| || || Sbjct 646 CCGCCACGCAGGCGGAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCA 705 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || ||||| || ||||| | || || || ||||| || || || Sbjct 706 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCGAAAATGAGGCGCTGCTGGTCAGGGGGA 765 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || ||||| ||| || || | | || | |||||| | | ||||||| Sbjct 766 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACC 825 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | |||||||||||||| ||| || ||||| || |||||| Sbjct 826 TCGAGGGCAATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATA 873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496029176307200