Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angomonas_20deanei_20[genbank_20GCA_5F000482225.1_202013-10-25] 5,616 sequences; 23,079,371 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1044 89.7 5e-13 seq587 82.4 7e-11 >seq1044 Length=4624 Score = 89.7 bits (98), Expect = 5e-13 Identities = 121/165 (73%), Gaps = 4/165 (2%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || || | ||||| | | ||||| || || || |||||||| ||| Sbjct 867 TCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATACCTTCCTTG 808 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG--TCGACGTCAATCGTGA 94970 || | || || ||||||||| ||| ||||| || ||| ||||| || | | || Sbjct 807 TCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTC-GC-TGGCCTCGACCTCGAGGGCGA 750 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTACAA 95015 |||| || || || || || |||||||| |||||||| |||| || Sbjct 749 TGGTCTTACCGGTGAGGGTCTTCACAAAAATCTGCATTCTTAAAA 705 >seq587 Length=8987 Score = 82.4 bits (90), Expect = 7e-11 Identities = 117/161 (73%), Gaps = 4/161 (2%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || || | ||||| | | ||||| || || || |||||||| ||| Sbjct 1839 TCCTCCAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATACCTTCCTTG 1780 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG--TCGACGTCAATCGTGA 94970 || | || || ||||||||| ||| ||||| || ||| ||||| || | | || Sbjct 1779 TCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTC-GC-TGGCCTCGACCTCGAGGGCGA 1722 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 |||| || || || || || ||||| || |||||||| ||| Sbjct 1721 TGGTCTTACCGGTGAGGGTCTTCACGAAAATCTGCATTCTT 1681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448259729957760