Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angomonas_20deanei_20[genbank_20GCA_5F000482225.1_202013-10-25] 5,616 sequences; 23,079,371 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq5372 100 2e-16 seq1880 100 2e-16 seq4543 98.7 8e-16 seq4373 96.9 3e-15 seq3993 93.3 3e-14 seq1044 87.8 1e-12 seq587 87.8 1e-12 >seq5372 Length=561 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 |||||||| |||||||| || ||||||||||| || | || | | ||||||| || Sbjct 69 TGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGC 128 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| || |||| || ||||| ||||| ||| | |||||| ||||| || | | Sbjct 129 TTGCCAGCGAAAATGAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTC 188 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | ||||||| | |||| || | || || || || |||||| Sbjct 189 GCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCGAGGGCAATCGTCTTGCCGGTC 248 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 ||||| || || || |||||||| Sbjct 249 AGCGTCTTCACGAAGATCTGCAT 271 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 |||||||| |||||||| || ||||||||||| || | || | | ||||||| || Sbjct 297 TGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGC 356 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| || |||| || ||||| ||||| ||| | |||||| ||||| || | | Sbjct 357 TTGCCAGCGAAAATGAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTC 416 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | ||||||| | |||| || | || || || || |||||| Sbjct 417 GCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCGAGGGCAATCGTCTTGCCGGTC 476 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 ||||| || || || |||||||| Sbjct 477 AGCGTCTTCACGAAGATCTGCAT 499 >seq1880 Length=2433 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 |||||||| |||||||| || ||||||||||| || | || | | ||||||| || Sbjct 2227 TGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGC 2286 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| || |||| || ||||| ||||| ||| | |||||| ||||| || | | Sbjct 2287 TTGCCAGCGAAAATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTC 2346 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | ||||||| | |||| || | || || || || |||||| Sbjct 2347 GCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCGAGGGCAATCGTCTTGCCGGTC 2406 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 ||||| || || || |||||||| Sbjct 2407 AGCGTCTTCACGAAGATCTGCAT 2429 >seq4543 Length=829 Score = 98.7 bits (108), Expect = 8e-16 Identities = 143/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 |||||||| |||||||| || ||||||||||| || | || | | ||||||| || Sbjct 628 TGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGC 687 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| || |||| || ||||| ||||| ||| | |||||| ||||| || | | Sbjct 688 TTGCCAGCGAAAATGAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTC 747 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | ||||||| | |||| || | || || || || |||||| Sbjct 748 GCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCGAGGGCAATCGTCTTGCCGGTC 807 Query 16913 AGCGTTTTGACAAAAATCTGCA 16934 ||||| || || || ||||||| Sbjct 808 AGCGTCTTCACGAAGATCTGCA 829 >seq4373 Length=891 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 |||||||| |||||||| || ||||||||||| || | || | | ||||||| || Sbjct 670 TGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCCTCCAGCTGC 729 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| || |||| || ||||| ||||| || | |||||| ||||| || | | Sbjct 730 TTGCCAGCGAAAATGAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTC 789 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | ||||||| | |||| || | || || || || |||||| Sbjct 790 GCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCGAGGGCAATCGTCTTGCCGGTC 849 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 ||||| || || || |||||||| Sbjct 850 AGCGTCTTCACGAAGATCTGCAT 872 >seq3993 Length=1029 Score = 93.3 bits (102), Expect = 3e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 |||||||| |||||||| || ||||||||||| || | || | | ||||||| || Sbjct 83 TGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGC 142 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||| || |||| || ||||| ||||| || | |||||| ||||| || | | Sbjct 143 TTGCCAGCGAAAATGAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTC 202 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | ||||||| | |||| || | || || || || ||||| Sbjct 203 GCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACCTCGAGGGCAATCGTCTTGCCGGTT 262 Query 16913 AGCGTTTTGACAAAAATCTGCATTTT 16938 | || || |||||||||||||| || Sbjct 263 AAAGTCTTCACAAAAATCTGCATGTT 288 >seq1044 Length=4624 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || || |||||||| || | ||| | | ||||||| || Sbjct 915 TGGAGGGTGGACTCCTTCTGGATATTGTAGTCCGCGAGGGTGCGGCCCTCCTCCAGCTGC 856 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 ||||| || | || || ||||| |||||| || | || || ||||| || || Sbjct 855 TTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATACCTTCCTTGTCCTGGATCTTG 796 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || ||| || | | | ||||||| || ||| || | || |||||| || |||| Sbjct 795 GC--CTTGACGTTCTCGATGGTGTCGCTGGCCTCGACCTCGAGGGCGATGGTCTTACCGG 738 Query 16911 TCAGCGTTTTGACAAAAATCTGCATT 16936 | || || || ||||||||||||||| Sbjct 737 TGAGGGTCTTCACAAAAATCTGCATT 712 >seq587 Length=8987 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || |||||||||||||| | ||| | | ||||||| || Sbjct 1887 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCCTCCTCCAGCTGC 1828 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 || || || | || || ||||| |||||| || | || || ||||| || || Sbjct 1827 TTACCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATACCTTCCTTGTCCTGGATCTTG 1768 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || ||| || | | | ||||||| || ||| || | || |||||| || |||| Sbjct 1767 GC--CTTGACGTTCTCGATGGTGTCGCTGGCCTCGACCTCGAGGGCGATGGTCTTACCGG 1710 Query 16911 TCAGCGTTTTGACAAAAATCTGCATT 16936 | || || || || |||||||||||| Sbjct 1709 TGAGGGTCTTCACGAAAATCTGCATT 1684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405060273751840