Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angomonas_20deanei_20[genbank_20GCA_5F000482225.1_202013-10-25] 5,616 sequences; 23,079,371 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1 107 2e-18 seq3993 96.9 3e-15 >seq1 Length=157016 Score = 107 bits (118), Expect = 2e-18 Identities = 267/405 (66%), Gaps = 3/405 (1%) Strand=Plus/Plus Query 129990 CATCAAACTCCACATTCCATCCGCTTCGACTCGTTTCATAAACAAATCGGGTACCCACAG 130049 ||||| ||||| ||| ||| | | ||| || ||||| || | ||| || | ||| || Sbjct 22967 CATCAGCGTCCACTGTCCCTCCTCCTTGACACGCTTCATGAAGAGATCAGGAATCCAAAG 23026 Query 130050 GGCGTACAACAAATCTCGCGCTTTTCTATCCTCGGCACCCATGTTACGTTTCAGTTCAAG 130109 |||||| |||| ||| || || | ||||| ||| |||| || ||||| | Sbjct 23027 GGCGTAAAACAGATCGCGGGCACGTTGGTCCTCCTTACCGGTGTTTCGCTTCAGGCGGAC 23086 Query 130110 GAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCCCTTCCGTTT 130169 ||| ||| | | ||||||||||||||| || | || | || | || ||||| || || Sbjct 23087 GAACTCGAACACGTCGGCGTGCCACGGCTCGAGGTACACGGCGAAGGCACCCTTACGCTT 23146 Query 130170 ---GCCCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCAACATTGCCTCCAA 130226 ||| || ||||| |||| ||| ||| || ||| | || || | ||| | | | | Sbjct 23147 ACCGCCACCCTGGTCCACGTAGCGGGCGGTGTTATTGAACACACGGAGCATGGGCACGAG 23206 Query 130227 TCCGTTGGCCGTGCCGTTTGTGCTCTCAATGAAACTGCCACGAGCCCGAACGTTATGAAC 130286 ||||||| || ||||| || | | ||| |||| || || || | ||| ||||| Sbjct 23207 ACCGTTGGAGGTACCGTTCGTACCGGCGATGTAACTACCGGAAGAGCGGATGTTGTGAAC 23266 Query 130287 GCTTAGACCTATGCCGCCGCCAAATTTTGATATCAACGCGCAATCGCGTAGCGTTTCATA 130346 | | || || || ||| | || || ||||| || || || || || Sbjct 23267 GTGGAACCCAATACCACCGGCCGCCTTACTGATGGTGGCGCACTCCTTGAGGGTGTCGTA 23326 Query 130347 AATGCCAACGATACTGTCTTCTTTAATGTTTAGGAGGAAACACGA 130391 ||||||| |||||||||| || || ||| | |||||| || || Sbjct 23327 AATGCCATCGATACTGTCGTCCTTCATGGCCACGAGGAAGCAGGA 23371 >seq3993 Length=1029 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| |||||||| || ||||||||||| || ||| | | || || ||||| | Sbjct 288 AACATGCAGATTTTTGTGAAGACTTTAACCGGCAAGACGATTGCCCTCGAGGTGGAGGCG 229 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||| || | || | | || || || || ||||||||||| ||||| || || Sbjct 228 AGCGACACGATCGAGAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATTCCCCCTGAC 169 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || || || || || || ||||| ||| | ||||| |||||| || | || ||| Sbjct 168 CAGCAGCGCCTCATTTTCGCTGGCAAGCAGCTGGAGGAGGGCCGCACGCTCGCGGACTAC 109 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || || || | || | || | || ||||||| ||| Sbjct 108 AACATCCAGAAGGAGTCGACGCTGCACCTCGTGCTCCGCCTGCGCGGCGGT 58 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419699271717040