Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angomonas_20deanei_20[genbank_20GCA_5F000482225.1_202013-10-25] 5,616 sequences; 23,079,371 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq2451 178 3e-39 seq170 102 2e-16 seq63 91.5 3e-13 >seq2451 Length=1853 Score = 178 bits (196), Expect = 3e-39 Identities = 570/865 (66%), Gaps = 37/865 (4%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 ||||| || || | ||| || || || || | |||||||||||| || ||||| || Sbjct 1393 TCGAAAAAGTTGGTCTTACCGGTCAAGGAAATCATCTCCATGAAGTCAAAAGGGTTCGTC 1334 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 ||| ||| ||||| | || || | || | | ||||| || |||||||| | Sbjct 1333 GCACCGTAGTGCTTCTCCTCACCGAGGGAAACAAGCAGACGGTCCGCAACAAACTCAATG 1274 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| | |||||| || | |||||||||||||| || || | | ||| |||||| Sbjct 1273 TACTGGCTCATCAGGTCCGCGTTCATGCCAATCAGGCGCACGGGCAGCGACTCGCAGATG 1214 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || ||||| ||| | ||||| || ||| | || | ||| || | | | |||| Sbjct 1213 AACTCCTTCTCGATCGCAACAGCGTCCGTGATGATGTTCAGCACGCGTTCGCGGGGCAGC 1154 Query 251803 TTGTTCTCCA----GCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858 |||| || | ||| | ||||||||| | |||| | ||||||||||||||| Sbjct 1153 TTGTGCTTGATGTGGCTGTT-GTACAGGAGGCAGGCAAAGTCCGTGTGCAGACCCTCGTC 1095 Query 251859 GCGACTGATGAACTCGTTGGACAGACC--CAGGCCAGGCATCACCCCACGGTTCCTGAGC 251916 ||| |||| |||||| || || | |||||| |||||||| || || ||| | ||| Sbjct 1094 GCGGGAAATGAGCTCGTT--ACTGAACGTCAGGCCGGGCATCACACCGCGCTTCTTCAGC 1037 Query 251917 CAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACA 251976 |||||||| ||||| ||||| || ||||| | | |||||| || | | ||| Sbjct 1036 CAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGATACCCTCCACGGCAGCAAAACCAATC 977 Query 251977 AGGCGCT-CAGCAA--ACGACTTGTCCTG-CGA--CAA-GAACTTCTGTGCCCATGCTGC 252029 ||||||| | | || || || | ||| ||| ||| | || ||||| | || Sbjct 976 AGGCGCTCCTGGAAGCTCGCCTCG--CTGCCGATCCAACGCAC-----GGCCCACTCCGC 924 Query 252030 CTTCTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATC 252089 ||| || | || ||||| || | ||| |||| | || | |||| ||| Sbjct 923 CTTGTTCTGGATCGACGGGATCGTCTGGATCGCATGCAGCAGCTTCACCTTCTCGTCATT 864 Query 252090 GTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAA 252149 ||| |||| | ||| ||||| | ||||| |||| || |||||| || | | Sbjct 863 GTCGGAGATGTAGGTATCCAGCAGCACCGAGTAGGTCTCGGAGTGGATGTTCTCCATCAT 804 Query 252150 CATCTGGTAAGCATAGAATAGACGCGC----GGAAGGGTCGGTGACTTCCGTGGAAAAGT 252205 || |||| | | ||||| ||||| |||| || | || ||||| ||| Sbjct 803 CAGCTGGAACCCGTAGAACGCGCGCGCCTCGGGAA---TC-TTCACGTCCGTCATGAAGC 748 Query 252206 TGTTTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCT 252265 | || | |||||| ||||| ||||| |||||||| ||||||||| | | | | || Sbjct 747 GCTGAGCGAGGTTCTCAATCACGATGCCGTCGCTGCCAGCAAAGAAGGCCAACACGTACT 688 Query 252266 TGATGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCA 252325 |||||||||| ||||| | || | |||| |||| |||||| | | ||| | || Sbjct 687 TGATGAAGTGCTGCTCACCCTCCGTCAGCT--TCAC-CCAGTCAACCAGGTCGTTCCCCA 631 Query 252326 GAGGAACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACATTGCG-AACACA 252384 | || ||||||| |||||||| | | || || ||||||| ||||| | | Sbjct 630 GGTCAATCTCTTCCAACGTCCAGATGCAGCTCTCCTGCTCCTTGTAC-TTGCGCCAGATG 572 Query 252385 TCAGGGTACTTGATTGGGAA-AGCA 252408 || |||||| ||| ||||| |||| Sbjct 571 TCGTGGTACTGGATCGGGAACAGCA 547 >seq170 Length=23694 Score = 102 bits (112), Expect = 2e-16 Identities = 215/319 (67%), Gaps = 5/319 (2%) Strand=Plus/Minus Query 251562 TTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGT 251621 |||||| || || | ||| || || || || | |||||||||||| || ||||| || Sbjct 328 TTCGAAAAAGTTGGTCTTACCGGTCAAGGAAATCATCTCCATGAAGTCAAAAGGGTTCGT 269 Query 251622 GGCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAG 251681 ||| ||| ||||| | || || | || | | ||||| || |||||||| | Sbjct 268 CGCACCGTAGTGCTTCTCCTCACCGAGGGAAACAAGCAGACGGTCCGCAACAAACTCAAT 209 Query 251682 ATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGAT 251741 ||||| | |||||| || | |||||||||||||| || || | | ||| ||||| Sbjct 208 GTACTGGCTCATCAGGTCCGCGTTCATGCCAATCAGGCGCACGGGCAGCGACTCGCAGAT 149 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAG 251801 ||| ||||| ||| | ||||| || ||| | || | ||| || | | | ||| Sbjct 148 GAACTCCTTCTCGATCGCAACAGCGTCCGTGATGATGTTCAGCACGCGTTCGCGGGGCAG 89 Query 251802 CTTGTTCTCCA----GCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGT 251857 ||||| || | ||| | ||||||||| | |||| | |||||||||||| | Sbjct 88 CTTGTGCTTGATGTGGCTGT-TGTACAGGAGGCAGGCAAAGTCCGTGTGCAGACCCTCAT 30 Query 251858 CGCGACTGATGAACTCGTT 251876 |||| |||| |||||| Sbjct 29 CGCGGGAAATGAGCTCGTT 11 >seq63 Length=39807 Score = 91.5 bits (100), Expect = 3e-13 Identities = 212/312 (68%), Gaps = 6/312 (2%) Strand=Plus/Minus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGA-TGTGGAGCGTTCTATTCC 218576 ||||| |||||||||| || ||||| ||||| || |||| |||| || || || Sbjct 30171 GACTTTGTCGACAAGGAACTGATTCTCTTCTCCATCGCCGACTGTG-AGCGGTCCATCCC 30113 Query 218577 CAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCG 218636 ||||| | || || |||||||| ||||||||||| || ||| | ||| || Sbjct 30112 CAGCGCCATTGACGGGTTCAAGCCAGGACAGCGTAAGATTCTATTTTGCTGTTTCCGCCG 30053 Query 218637 GAACCTGGTTCAAGAA-ATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTG 218695 || || |||| |||||||| | ||| | || || ||||| ||| || | Sbjct 30052 TAATCTCAC-CAAGTCGATTAAGGTGGTGCAGCTGTCCGGGTATGTCAGCGAGCACTCCG 29994 Query 218696 GCTACCATCACGGTGAGCAGAGTCTGCAGGGTG-CCATTGTAGGCATGGCACAGGACTAT 218754 |||||| |||||||||||| || || | |||| ||| |||||||||||||| Sbjct 29993 CCTACCACCACGGTGAGCAGTCCCT-CATCCAGACCATCGTATCTATGGCACAGGACTAC 29935 Query 218755 GTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTG 218814 ||||| || |||||| | | || || | | |||||||| ||| | ||||| | Sbjct 29934 GTGGGGAGCAACAACCTCCCCCTGTTGAAGCAGGATGGTCAGTTCGGTACGCGTCTGCAG 29875 Query 218815 GGTGGAAAGGAT 218826 || || |||||| Sbjct 29874 GGCGGTAAGGAT 29863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027762842003056