Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angomonas_20deanei_20[genbank_20GCA_5F000482225.1_202013-10-25] 5,616 sequences; 23,079,371 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq2451 132 1e-25 seq170 107 4e-18 >seq2451 Length=1853 Score = 132 bits (146), Expect = 1e-25 Identities = 304/447 (68%), Gaps = 17/447 (4%) Strand=Plus/Plus Query 243318 CGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGG 243377 ||| || ||||| | || ||||| |||||||||||||| |||||| ||| || Sbjct 992 CGTGGAGGGTATCTTCTTCTCCGGCTCCTTCTGCGCCATCTTCTGGCTGAAGAAGCGCGG 1051 Query 243378 TGTGATGCCTGGCCT--CGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCAC 243435 ||||||||| ||||| || || || |||||| |||| ||||||||||| || ||| Sbjct 1052 TGTGATGCCCGGCCTGACGTTCAGT--AACGAGCTCATTTCCCGCGACGAGGGTCTGCAC 1109 Query 243436 CAACAGTTCGGTGAGCTTATGTATTCAA-AGC----TCCAGAACAAGCTACCATTCGAAA 243490 | || | || |||| ||| ||| || || ||||||| || |||| Sbjct 1110 ACGGACTTTGCCTGCCTCCTGTA--CAACAGCCACATCAAGCACAAGCTGCCCCGCGAAC 1167 Query 243491 CGGTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGA--CGC 243548 || | |||||||| || || |||| | ||| ||||| ||||| ||||| ||| Sbjct 1168 GCGTGCTGAACATCATCACGGACGCTGTTGCGATCGAGAAGGAGTTCATCTGCGAGTCGC 1227 Query 243549 TATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGT 243608 | || ||| | || |||||||||||| | || || ||| | |||||||| || || || Sbjct 1228 TGC-CCGTGC-GCCTGATTGGCATGAACGCGGACCTGATGAGCCAGTACATTGAGTTTGT 1285 Query 243609 AGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTT 243668 || ||||| | | | | || ||| | ||||| ||| | | |||||| || Sbjct 1286 TGCGGACCGTCTGCTTGTTTCCCTCGGTGAGGAGAAGCACTACGGTGCGACGAACCCTTT 1345 Query 243669 TGCCTTTATGGAGCTCATTTCGCTTCA-AGGGAAAACTAACTTCTTCGAAAAGCGTGTCA 243727 || ||| |||||| | ||||| ||| | || || || ||||| ||||| ||| || Sbjct 1346 TGACTTCATGGAGATGATTTC-CTTGACCGGTAAGACCAACTTTTTCGATAAGAAGGTTG 1404 Query 243728 GTGATTATCAACGCCCTGGTGTGATGA 243754 |||| || || |||||||||||| Sbjct 1405 GTGAGTACCAGAAGGCTGGTGTGATGA 1431 >seq170 Length=23694 Score = 107 bits (118), Expect = 4e-18 Identities = 181/256 (71%), Gaps = 6/256 (2%) Strand=Plus/Plus Query 243502 ATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGA--CGCTATTCCATGCC 243559 |||||||| || || |||| | ||| ||||| ||||| ||||| |||| || ||| Sbjct 113 ATCATCACGGACGCTGTTGCGATCGAGAAGGAGTTCATCTGCGAGTCGCTGC-CCGTGC- 170 Query 243560 GGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCA 243619 | || |||||||||||| | || || ||| | |||||||| || || || || ||||| Sbjct 171 GCCTGATTGGCATGAACGCGGACCTGATGAGCCAGTACATTGAGTTTGTTGCGGACCGTC 230 Query 243620 TTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGG 243679 | | | | || ||| | ||||| ||| | | |||||| |||| ||| |||| Sbjct 231 TGCTTGTTTCCCTCGGTGAGGAGAAGCACTACGGTGCGACGAACCCTTTTGACTTCATGG 290 Query 243680 AGCTCATTTCGCTTCA-AGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAA 243738 || | ||||| ||| | || || || ||||| ||||||||| || |||| ||||| Sbjct 291 AGATGATTTC-CTTGACCGGTAAGACCAACTTTTTCGAAAAGAAGGTTGGTGAGTATCAG 349 Query 243739 CGCCCTGGTGTGATGA 243754 |||||||||||| Sbjct 350 AAGGCTGGTGTGATGA 365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102800642269600