Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angomonas_20deanei_20[genbank_20GCA_5F000482225.1_202013-10-25] 5,616 sequences; 23,079,371 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2451 223 5e-52 seq170 140 5e-27 seq1 125 1e-22 >seq2451 Length=1853 Score = 223 bits (246), Expect = 5e-52 Identities = 390/562 (69%), Gaps = 8/562 (1%) Strand=Plus/Plus Query 1455715 CGAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCG 1455774 ||||||||| | | || ||||| ||||||| || |||||||| |||| ||||| Sbjct 512 CGAGCCGCTCCGCCAGGAGAACCCCTACCGCTTCGTGCTGTTCCCGATCCAGTACCACGA 571 Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 || ||| | |||| || || ||| || | | ||||| || ||| | |||| Sbjct 572 CATCTGGCGCAAGTAC-AAGGAGCAGGAGAGCTGCATCTGGACGTTGGAAGAGATTGACC 630 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGC 1455894 | || |||| ||| |||||||| ||||| || | |||| || ||||||||| Sbjct 631 TGGGGAACGACCTGGTTGACTGGGTGAAGCTGACGGAGGGTGAGCAGCACTTCATCAAGT 690 Query 1455895 ACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGC 1455954 |||| | ||||| ||| || | |||||| ||||||||| |||||||| || ||| Sbjct 691 ACGTGTTGGCCTTCTTT-GCTGGCAGCGACGGCATCGTGATTGAGAACCTCGCTCAGCGC 749 Query 1455955 TTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATC 1456014 || |||| || || | | || ||||| || ||| |||||||||||| | || Sbjct 750 TTCATGACGGACGTGAAGATTCCCGAGGCGCGCGCGTTCTACGGGTTCCAGCTGATGATG 809 Query 1456015 GAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTC 1456074 || ||||||||||| || ||||||||| | ||| | || |||||| || ||| | | Sbjct 810 GAGAACATCCACTCCGAGACCTACTCGGTGCTGCTGGATACCTACATCTCCGACAATGAC 869 Query 1456075 GAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGAC 1456134 ||||||| | || | | || ||| | ||| | |||||| | ||| ||||| || Sbjct 870 GAGAAGGTGAAGCTGCTGCATGCGATCCAGACGATCCCGTCGATCCAGAACAAGGCGGAG 929 Query 1456135 TGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCT 1456194 ||||| || |||||| || |||| ||| ||| ||||| || | || | Sbjct 930 TGGGCCGTGCGTTGGATCGGCAGCGAGG----CGA-GCTTCCAGGAGCGCCTGATTGGTT 984 Query 1456195 TTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGA 1456253 |||| | ||| ||||| ||||| ||||| ||| |||||||||||||| ||||| |||| Sbjct 985 TTGCTGCCGTGGAGGGTATCTTCTTCTCCGGCTCCTTCTGCGCCATCTTCTGGCTGAAGA 1044 Query 1456254 AGCGCGGCCTCATGCCCGGTCT 1456275 ||||||| | |||||||| || Sbjct 1045 AGCGCGGTGTGATGCCCGGCCT 1066 Score = 140 bits (154), Expect = 5e-27 Identities = 216/300 (72%), Gaps = 14/300 (5%) Strand=Plus/Plus Query 1456448 GGTTTGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAA---CAAGCCGTCG 1456504 ||| ||||| ||||||||||| || || |||| | | | |||| ||||| | | Sbjct 1101 GGTCTGCACACGGACTTTGCCTGCCTCCTGTACAACAGCCACATCAAGCACAAGCTGCCC 1160 Query 1456505 ACCGA---CGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTC 1456561 ||| ||||| || |||||| || || || | ||||||||| ||||| || Sbjct 1161 CGCGAACGCGTGCTGAAC---ATCATCACGGACGCTGTTGCGATCGAGAAGGAGTTCATC 1217 Query 1456562 AGCGAGTCGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACAT 1456621 ||||||||||||| ||| || || ||||||||||| | || ||| |||||||||| Sbjct 1218 TGCGAGTCGCTGCCCGTGCGCCTGATTGGCATGAACGCGGAC-CTGATGAGCCAGTACAT 1276 Query 1456622 TGAATTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACG 1456681 || | ||||| || ||||| ||||| | | ||||| || ||||||||||||| | || Sbjct 1277 TG-AGTTTGTTGCGGACCGTCTGCTTGTTTCCCTCGG-TGAGGAGAAGCACTACGGTGCG 1334 Query 1456682 GCCAACCCGTTCCCATGGATGGAGTTGATCTCGCTCGA-GGGCAAGACCAACTTTTTCGA 1456740 | ||||| || | |||||| |||| || || || || ||||||||||||||||| Sbjct 1335 ACGAACCCTTTTGACTTCATGGAGATGATTTC-CTTGACCGGTAAGACCAACTTTTTCGA 1393 >seq170 Length=23694 Score = 140 bits (154), Expect = 5e-27 Identities = 216/300 (72%), Gaps = 14/300 (5%) Strand=Plus/Plus Query 1456448 GGTTTGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAA---CAAGCCGTCG 1456504 ||| ||||| ||||||||||| || || |||| | | | |||| ||||| | | Sbjct 35 GGTCTGCACACGGACTTTGCCTGCCTCCTGTACAACAGCCACATCAAGCACAAGCTGCCC 94 Query 1456505 ACCGA---CGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTC 1456561 ||| ||||| || |||||| || || || | ||||||||| ||||| || Sbjct 95 CGCGAACGCGTGCTGAAC---ATCATCACGGACGCTGTTGCGATCGAGAAGGAGTTCATC 151 Query 1456562 AGCGAGTCGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACAT 1456621 ||||||||||||| ||| || || ||||||||||| | || ||| |||||||||| Sbjct 152 TGCGAGTCGCTGCCCGTGCGCCTGATTGGCATGAACGCGGAC-CTGATGAGCCAGTACAT 210 Query 1456622 TGAATTTTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACG 1456681 || | ||||| || ||||| ||||| | | ||||| || ||||||||||||| | || Sbjct 211 TG-AGTTTGTTGCGGACCGTCTGCTTGTTTCCCTCGG-TGAGGAGAAGCACTACGGTGCG 268 Query 1456682 GCCAACCCGTTCCCATGGATGGAGTTGATCTCGCTCGA-GGGCAAGACCAACTTTTTCGA 1456740 | ||||| || | |||||| |||| || || || || ||||||||||||||||| Sbjct 269 ACGAACCCTTTTGACTTCATGGAGATGATTTC-CTTGACCGGTAAGACCAACTTTTTCGA 327 >seq1 Length=157016 Score = 125 bits (138), Expect = 1e-22 Identities = 218/317 (69%), Gaps = 0/317 (0%) Strand=Plus/Minus Query 259866 TGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCAGCGACGC 259925 |||||| | | | | ||||||||| |||||| | || || ||| || || | Sbjct 23472 TGGAGCGCATTCGCCGCACCTACGATCTCATGTCCTTGGGATTCTTTACCCACGCCACCC 23413 Query 259926 CCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACA 259985 | || || || || ||||| || ||| || |||| || ||||| || ||| || Sbjct 23412 CTACCCTGTTCAACGCCGGTACCCCGAAGCCTCAGATGAGTTCCTGCTTCCTCGTGGCCA 23353 Query 259986 TGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCA 260045 |||||| ||| ||||| ||||| || ||||| |||||| ||||||| |||| | Sbjct 23352 TGAAGGACGACAGTATCGATGGCATTTACGACACCCTCAAGGAGTGCGCCACCATCAGTA 23293 Query 260046 AGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGG 260105 |||||||||| || || || || || ||||| | ||| | | || ||| | | Sbjct 23292 AGGCGGCCGGTGGTATTGGGTTCCACGTTCACAACATCCGCTCTTCCGGTAGTTACATCG 23233 Query 260106 CGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGG 260165 | || || ||||| |||||||| || ||||||||||| || || || || |||| | Sbjct 23232 CCGGTACGAACGGTACCTCCAACGGTCTCGTGCCCATGCTCCGTGTGTTCAATAACACCG 23173 Query 260166 CGCGCTACGTCGACCAG 260182 | |||||||| |||||| Sbjct 23172 CCCGCTACGTGGACCAG 23156 Score = 113 bits (124), Expect = 6e-19 Identities = 359/547 (66%), Gaps = 20/547 (4%) Strand=Plus/Minus Query 262870 AGCGGCCGCTGGGACTGGGACGCACTGCGG--GCGTCGGTTCGACAGCATGGCCTGCGCA 262927 |||||||||||| ||||||| || || | |||| | || | | || |||| | Sbjct 22288 AGCGGCCGCTGGAACTGGGATGCCCTCAAGAAGCGTGTCATGGAGA--AGGGGTTGCGTA 22231 Query 262928 ACTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCG 262987 |||| | ||| |||||| ||||||||| ||| | || || ||||| ||||| |||| || Sbjct 22230 ACTCCCTCCTCCTGGCGCCCATGCCCACCGCCTCCACCTCTCAGATTCTGGGTAACAACG 22171 Query 262988 AGGCGTTCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTA 263047 || |||||| | ||||| ||||| ||| || || ||||| || || || Sbjct 22170 AGTGCTTCGAGCCCTTCACGTCGAACATTTACGTCCGTCGTGTGCTGAGCGGTGAGTTCC 22111 Query 263048 CCGTGGTCAACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTGTGGACGCCCGACT 263107 | ||||| ||| | || || | | | | | |||| |||||||| || Sbjct 22110 CGGTGGTGAACAAGTATCTCGTGATGGACCTCATCAAGCGCAACCTGTGGAACGATGAGA 22051 Query 263108 TTCGCGACCGGCTCATTGCGGCACAGGGCTCGGT-GCAGGGCTTTGACGACGAGGAGGTG 263166 | || || |||| | | ||||| || || || | || || ||| Sbjct 22050 TCCGTAACGAAATCATCACCTTCAACGGCTCCGTCGCTGG--TGTGGCG-------GGTA 22000 Query 263167 CCGCC--CGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCCCAACCGGGTGACCA 263224 | || ||| |||||| |||| | |||||||||||| | || | || | | Sbjct 21999 TCCCCGACGACATCAAGGAGCTCTACCGCACCGTGTGGGAGATCTCCCAGCGTCAGCTGA 21940 Query 263225 TTGATATGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACC 263284 | |||||||| || | |||||| ||| | |||||| ||||| | ||||| |||| Sbjct 21939 TCGATATGGCCGCGGCCCGCGCCAAGTATATTGACCAGTCGCAGTCCATGAACCTCTACC 21880 Query 263285 TCGCCGACCCGACGGCCGAGAGCATCACGTCGATGCACGCCTA-TGCGTGGC-GTCGCGG 263342 ||| ||| | ||| | ||||| || |||||| | | ||| |||| ||| || Sbjct 21879 TCGAGAGCCCCTCCTCCGGCCGTATCACCTCCATGCACTTCCACTGC-TGGCAGTCT-GG 21822 Query 263343 CCTCAAGACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCAC 263402 || ||||| ||||||||||| || |||||||| |||||||| |||| || | || || Sbjct 21821 ACTGAAGACGGGCATGTACTACCTCCGCACCCGTCCCGCTGCGGACGCGATCAAGTTTAC 21762 Query 263403 CGTCGAT 263409 ||||||| Sbjct 21761 CGTCGAT 21755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177269526477792