Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angomonas_20deanei_20[genbank_20GCA_5F000482225.1_202013-10-25] 5,616 sequences; 23,079,371 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1 167 3e-36 seq2451 109 7e-19 seq60 91.5 2e-13 >seq1 Length=157016 Score = 167 bits (184), Expect = 3e-36 Identities = 463/709 (65%), Gaps = 11/709 (2%) Strand=Plus/Plus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||| ||||| | ||| | || || ||||| || || ||||||| || || | |||||| Sbjct 22139 GTAAATGTTCGACGTGAAGGGCTCGAAGCACTCGTTGTTACCCAGAATCTGAGAGGTGGA 22198 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 ||| || ||||| || |||| | || |||||| | ||||||||| ||| || | Sbjct 22199 GGCGGTGGGCATGGGCGCCAGGAGGAGGGAGTTACGCAACCCCTTCTCCATGACACGCTT 22258 Query 110827 CTTGAGAACATCCCAGTCGTAGTTGA-GCTTG------GTTTCACCTTCCCACATGTCAA 110879 |||||| ||||||||| || | ||| | ||||| ||||| | ||| | Sbjct 22259 CTTGAGGGCATCCCAGTTCCAGCGGCCGCTCGTGGGCTGTTTC----TCCCATAAGTCGA 22314 Query 110880 ACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTT 110939 |||| ||| ||| | || || || |||| ||||| ||||||| ||| | | | Sbjct 22315 ACTGCAGCTTCCCCTCCGAGGCAGGGCTGCCCTTGAAGGTCTCATAGGGACCCTCCACCT 22374 Query 110940 CAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCAT 110999 | || | || | | ||||| | |||| || ||||| || ||||| ||| Sbjct 22375 CCGCGAGGTCCGTGGAGGACTCCACCGCGGCGTAGTAGATGGTCTCGAAGATCTCCTCAT 22434 Query 111000 TCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGA 111059 | | || || || || || || | | ||| | |||||| |||| || | Sbjct 22435 TGAGCTTCTGCGCCTCCTCGCTCGTGAAGGGGAGACGGAGGAGAATAAAGGCATCGGCTA 22494 Query 111060 GACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAA 111119 | || || || || | || || || | ||| ||| || | | ||||| || | Sbjct 22495 GCCCCTGCACGCCAAGGCCGATCGGGCGGTGGCGCTCGTTGCTCCTCTTGGCAGTTTCCA 22554 Query 111120 CGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTT 111179 |||| || || | | ||||||||| ||||| || || | ||||| ||| |||| | Sbjct 22555 CGGGGTAGTAACTGCGGTCAATGACGCGGTTCAGGTTGTACGTAACGTCCTTGGTGACCT 22614 Query 111180 CATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGA 111239 ||| || || | || || | |||| | | |||| |||| ||||||| Sbjct 22615 CATAGAGGCGTTGGTGGTCGAACACCTGCTTCTCCACGTCGACAAACTTGCTGAGGGCGA 22674 Query 111240 TTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTAC 111299 | || || | ||||| || || ||||||||||| |||||||| | ||| || || | Sbjct 22675 TGGAGGCGAGGTTGCAGACGGCGGTCTCATCCTTGGAGGTGTACTCGATAATCTCCGTGC 22734 Query 111300 ATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCAT 111359 | | ||||| | ||| || || ||||||||||| || || ||||||||||| || | Sbjct 22735 ACAGATTGGAGCACTTGATGGTACCCAAATTCTTCTGATTGGATTTCTTGTTGCAGGCGT 22794 Query 111360 CCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAAT 111408 ||||||| |||||| | || || ||||| ||||| || |||| || Sbjct 22795 CCTTGTACAGCATGAAAGGGACGCCGGTCTCGGTCTGGGACATGAGGAT 22843 >seq2451 Length=1853 Score = 109 bits (120), Expect = 7e-19 Identities = 116/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| ||| ||| |||||||| || |||||||| || || || ||| || || Sbjct 1121 GGCAAAGTCCGTGTGCAGACCCTCGTCGCGGGAAATGAGCTCGTTACTGAACGTCAGGCC 1062 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 ||||| | ||| |||||||||| ||| | || |||||||| || |||||||||||||| Sbjct 1061 GGGCATCACACCGCGCTTCTTCAGCCAGAAGATGGCGCAGAAGGAGCCGGAGAAGAAGAT 1002 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTC 122810 ||||||||| ||||| ||| ||||| || Sbjct 1001 ACCCTCCACGGCAGCAAAACCAATCAGGCGCTC 969 >seq60 Length=41165 Score = 91.5 bits (100), Expect = 2e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||||||| ||||||| ||| | ||| ||| ||||||||||||| |||| Sbjct 3221 GCTCCTATAGTGTAGTGGTTATCACTTCGGATTCTGATTCCGACAACCCTGGTTCGAATC 3162 Query 145342 CAGGTAGGAG 145351 |||||||||| Sbjct 3161 CAGGTAGGAG 3152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627987912153600