Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angomonas_20deanei_20[genbank_20GCA_5F000482225.1_202013-10-25] 5,616 sequences; 23,079,371 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1880 102 2e-16 seq1044 102 2e-16 seq4543 100 9e-16 seq5372 96.9 1e-14 seq5243 96.9 1e-14 seq3993 96.9 1e-14 seq2033 96.9 1e-14 seq587 93.3 1e-13 >seq1880 Length=2433 Score = 102 bits (112), Expect = 2e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||| ||||| | | || || || || || || ||||| || || || || || || Sbjct 2199 CATACCGCCACGCAGGCGGAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC 2258 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || || || || || || || ||||| || || ||||| ||||| ||||| Sbjct 2259 CGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCAGG 2318 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || ||||| || || || || || || || |||| || | || Sbjct 2319 AGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTC 2378 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | || ||||| ||||| || || || || || |||||||| Sbjct 2379 CACCTCGAGGGCAATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 2429 >seq1044 Length=4624 Score = 102 bits (112), Expect = 2e-16 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 |||||| || | | || || || || || || ||||| || || ||||| || || | Sbjct 940 ACCACCGCGCAGGCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCCGC 881 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || || || || || || || ||||| ||||| ||||| ||||| || || || Sbjct 880 GAGGGTGCGGCCCTCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGG 821 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGT-TCAA 140688 || ||||| || ||||| || || || || || || || || | || | ||| || | Sbjct 820 GATACCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTC-GCTGGCCTCGA 762 Query 140689 CTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 | || || | | ||||| ||||| || || || ||||||||||||||| Sbjct 761 CCTCGAGGGCGATGGTCTTACCGGTGAGGGTCTTCACAAAAATCTGCATT 712 >seq4543 Length=829 Score = 100 bits (110), Expect = 9e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||| ||||| | | || || || || || || ||||| || || || || || || Sbjct 600 CATACCGCCACGCAGGCGGAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC 659 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || || || || || || || ||||| || || ||||| ||||| ||||| Sbjct 660 CGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCAGG 719 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || ||||| || || || || || || || |||| || | || Sbjct 720 AGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTC 779 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCA 140736 || || || | || ||||| ||||| || || || || || ||||||| Sbjct 780 CACCTCGAGGGCAATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCA 829 >seq5372 Length=561 Score = 96.9 bits (106), Expect = 1e-14 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||| ||||| | | || || || || || || ||||| || || || || || || Sbjct 41 CATACCGCCACGCAGGCGGAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC 100 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || || || || || || || ||||| || || || || ||||| ||||| Sbjct 101 CGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCGAAAATGAGGCGCTGCTGGTCAGG 160 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || ||||| || || || || || || || |||| || | || Sbjct 161 AGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTC 220 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | || ||||| ||||| || || || || || |||||||| Sbjct 221 CACCTCGAGGGCAATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 271 Score = 96.9 bits (106), Expect = 1e-14 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||| ||||| | | || || || || || || ||||| || || || || || || Sbjct 269 CATACCGCCACGCAGGCGGAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC 328 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || || || || || || || ||||| || || || || ||||| ||||| Sbjct 329 CGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCGAAAATGAGGCGCTGCTGGTCAGG 388 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || ||||| || || || || || || || |||| || | || Sbjct 389 AGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTC 448 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | || ||||| ||||| || || || || || |||||||| Sbjct 449 CACCTCGAGGGCAATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 499 >seq5243 Length=600 Score = 96.9 bits (106), Expect = 1e-14 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 |||||| || | | || || || || || || |||||||| || || || || || | Sbjct 573 ACCACCGCGAAGGCGGAGCACGAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCCGC 514 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || || || || || || || ||||| ||||| ||||| ||||| || || || Sbjct 513 GAGGGTGCGGCCCTCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGGGG 454 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGT-TCAA 140688 || ||||| || ||||| || || || || || || || || | || | ||| || | Sbjct 453 GATACCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTC-GCTGGCCTCGA 395 Query 140689 CTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 | || || | | ||||| ||||| || || || || |||||||||||| Sbjct 394 CCTCGAGGGCGATGGTCTTACCGGTGAGGGTCTTCACGAAAATCTGCATT 345 >seq3993 Length=1029 Score = 96.9 bits (106), Expect = 1e-14 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||| || || | | || || || || || || ||||| || || || || || || Sbjct 55 CATACCGCCGCGCAGGCGGAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC 114 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || || || || || || || ||||| || || || || ||||| ||||| Sbjct 115 CGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCGAAAATGAGGCGCTGCTGGTCAGG 174 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || || ||||| || || || || || || || |||| || | || Sbjct 175 GGGAATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCGCTCGCCTC 234 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | || ||||| ||||||| || || |||||||||||||| Sbjct 235 CACCTCGAGGGCAATCGTCTTGCCGGTTAAAGTCTTCACAAAAATCTGCAT 285 >seq2033 Length=2245 Score = 96.9 bits (106), Expect = 1e-14 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 |||||| || | | || || || || || || |||||||| || || || || || | Sbjct 435 ACCACCGCGAAGGCGGAGCACGAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCCGC 376 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || || || || || || || ||||| ||||| ||||| ||||| || || || Sbjct 375 GAGGGTGCGGCCCTCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGGGG 316 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGT-TCAA 140688 || ||||| || ||||| || || || || || || || || | || | ||| || | Sbjct 315 GATACCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTC-GCTGGCCTCGA 257 Query 140689 CTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 | || || | | ||||| ||||| || || || || |||||||||||| Sbjct 256 CCTCGAGGGCGATGGTCTTACCGGTGAGGGTCTTCACGAAAATCTGCATT 207 >seq587 Length=8987 Score = 93.3 bits (102), Expect = 1e-13 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 |||||| || | | || || || || || || ||||| || || || || || || | Sbjct 1912 ACCACCGCGCAGGCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 1853 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || || || || || || || ||||| ||||| ||||| ||||| || || || Sbjct 1852 GAGGGTGCGGCCCTCCTCCAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGGGG 1793 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGT-TCAA 140688 || ||||| || ||||| || || || || || || || || | || | ||| || | Sbjct 1792 GATACCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTC-GCTGGCCTCGA 1734 Query 140689 CTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 | || || | | ||||| ||||| || || || || |||||||||||| Sbjct 1733 CCTCGAGGGCGATGGTCTTACCGGTGAGGGTCTTCACGAAAATCTGCATT 1684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515145369869648