Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angomonas_20deanei_20[genbank_20GCA_5F000482225.1_202013-10-25] 5,616 sequences; 23,079,371 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq3993 93.3 3e-14 seq587 82.4 5e-11 >seq3993 Length=1029 Score = 93.3 bits (102), Expect = 3e-14 Identities = 142/197 (72%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 |||||| || ||||| || || | || || || | || || || || || || || || Sbjct 94 CTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCGAA 153 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 || | ||||| ||||| || || | ||||||||||| |||||| | || ||| Sbjct 154 AATGAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTC-GCCTTCACGT 212 Query 34635 TAAA-ATTGTGTCT-TCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTC 34692 | || ||||| |||| |||||| || | || ||||| || |||||||| || ||| Sbjct 213 TCTCGATCGTGTCGCTCGC-CTCCACCTCGAGGGCAATCGTCTTGCCGGTTAAAGTCTTC 271 Query 34693 ACAAAAATCTGCATGTT 34709 ||||||||||||||||| Sbjct 272 ACAAAAATCTGCATGTT 288 >seq587 Length=8987 Score = 82.4 bits (90), Expect = 5e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||| ||| |||||| || ||||| || || | || || || | || || || || Sbjct 1887 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCCTCCTCCAGCTGC 1828 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 ||||| || || || | |||||| |||||||| || | || |||||||| |||||| Sbjct 1827 TTACCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATACCTTCCTTGTCCTGGATCTTG 1768 Query 34624 TGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 | || ||| | || ||||| | ||| || || | || || || |||||||| Sbjct 1767 -GCCTTGACGTTCTCGATGGTGTCGCTGGCCTCGACCTCGAGGGCGATGGTCTTACCGGT 1709 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 | || ||||| ||||||||||| Sbjct 1708 GAGGGTCTTCACGAAAATCTGCAT 1685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314708058332528