Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angomonas_20deanei_20[genbank_20GCA_5F000482225.1_202013-10-25] 5,616 sequences; 23,079,371 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq587 96.9 2e-15 seq5243 91.5 1e-13 seq2033 91.5 1e-13 seq1044 87.8 1e-12 >seq587 Length=8987 Score = 96.9 bits (106), Expect = 2e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || |||||||| || || || ||| | ||||| || || ||| Sbjct 1684 AATGCAGATTTTCGTGAAGACCCTCACCGGTAAGACCATCGCCCTCGAGGTCGAGGCCAG 1743 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || | | || || || ||||| |||||| | || || || || Sbjct 1744 CGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTATCCCCCCGGACCA 1803 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || || || || || ||||| || | ||||| | | ||| ||||| Sbjct 1804 GCAGCGTCTCATCTTCGCTGGTAAGCAGCTGGAGGAGGGCCGCACCCTCGCCGACTACAA 1863 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 1864 CATCCAGAAGGAGTCCAC 1881 >seq5243 Length=600 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || |||||||| || || || ||| | ||||| || || ||| Sbjct 345 AATGCAGATTTTCGTGAAGACCCTCACCGGTAAGACCATCGCCCTCGAGGTCGAGGCCAG 404 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || | | || || || ||||| |||||| | || || || || Sbjct 405 CGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTATCCCCCCGGACCA 464 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || || || || || || || || | ||||| | | || ||||| Sbjct 465 GCAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAGGAGGGCCGCACCCTCGCGGACTACAA 524 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 525 CATCCAGAAAGAGTCCAC 542 >seq2033 Length=2245 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| || |||||||| || || || ||| | ||||| || || ||| Sbjct 207 AATGCAGATTTTCGTGAAGACCCTCACCGGTAAGACCATCGCCCTCGAGGTCGAGGCCAG 266 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || | | || || || ||||| |||||| | || || || || Sbjct 267 CGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTATCCCCCCGGACCA 326 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || || || || || || || || | ||||| | | || ||||| Sbjct 327 GCAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAGGAGGGCCGCACCCTCGCGGACTACAA 386 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 387 CATCCAGAAAGAGTCCAC 404 >seq1044 Length=4624 Score = 87.8 bits (96), Expect = 1e-12 Identities = 142/203 (70%), Gaps = 1/203 (0%) Strand=Plus/Plus Query 23606 TTAA-AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGAC 23664 |||| |||||||||||| || || |||||||| || || || ||| | ||||| || || Sbjct 707 TTAAGAATGCAGATTTTTGTGAAGACCCTCACCGGTAAGACCATCGCCCTCGAGGTCGAG 766 Query 23665 TCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCA 23724 ||| ||||| | || | | || || || ||||| |||||| | || || Sbjct 767 GCCAGCGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTATCCCCCCG 826 Query 23725 GATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGAT 23784 || || |||||| | || || || ||||| || ||||| || | ||||| | | || Sbjct 827 GACCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTGGAGGAGGGCCGCACCCTCGCGGAC 886 Query 23785 TACAACATACAAAAAGAGTCCAC 23807 ||||| || || || |||||||| Sbjct 887 TACAATATCCAGAAGGAGTCCAC 909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337986464932928