Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angomonas_20deanei_20[genbank_20GCA_5F001659865.1_202016-06-08] 408 sequences; 19,282,250 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq106 161 9e-35 seq21 104 2e-17 >seq106 Length=352803 Score = 161 bits (178), Expect = 9e-35 Identities = 382/567 (67%), Gaps = 15/567 (3%) Strand=Plus/Minus Query 146614 ACGTTGACGCACTTGTTGACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTG 146673 |||| ||| ||||| ||| |||||| ||||| | ||| || ||||| ||||| |||||| Sbjct 187962 ACGTCGACAAACTTGCTGAGGGCGATGGAGGCGAGGTTGCAGACGGCGGTCTCATCCTTG 187903 Query 146674 TCGCAATACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttt 146733 | |||| | |||||| | ||| || ||| |||||||||| | |||||||| || Sbjct 187902 GAGGTGTACTCGATAATCTCCGTGCACAGATTGGAGCACTTGATGGTACCCAAATTCTTC 187843 Query 146734 tGGTTACTAAACTTGTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACA 146793 || || ||||||||||| ||||||||| |||||| | || | ||||| ||| Sbjct 187842 TGATTGGATTTCTTGTTGCAGGCGTCCTTGTACAGCATGAAAGGGACGCCGGTCTCGGTC 187783 Query 146794 TTGGTCTCGACGATGAATCTAA--ACAAATCTCTGGCCTTTACTTGTCTT-TCGTACAGT 146850 | || | || ||| || || |||| || ||| | | | ||||| || || | Sbjct 187782 TGGGACATGAGGAT--CTCAAACCACAAGTC-CTGCGCCGGAATCGTCTTGACGCCCATT 187726 Query 146851 TTATTCTTTTCGTATTTCTCGTACAATATTTCAAA--ACTAGAACCGTACTCGTCGAGGA 146908 ||||||||||| | ||||||| || || || | ||||| |||| | Sbjct 187725 CCCTTCTTTTCGTACTCCTCGTACTTCCGCTCGAACTCCTCG--CCGTAGCAGTCGCTCA 187668 Query 146909 GGCCGGGATACTTTTTGGGACAGAACAGCGACCATTCTTTATTCTCCTTCACGCGTTCCA 146968 |||| | || ||||| | ||||| ||| | | | |||||| || || | || Sbjct 187667 GGCCTGTGCACACGTTGGGGTCCATCAGCGTCCACTGTCCCTCCTCCTTGACACGCTTCA 187608 Query 146969 TAAACAAATCGGGAATCCAAAGGCCCAGCATCAAGTCGCGAGC-CTTGGCGTCCTCGGAG 147027 | || | ||| |||||||||||| | | || ||||| || | | | |||||| Sbjct 187607 TGAAGAGATCAGGAATCCAAAGGGCGTAAAACAGATCGCGGGCACGTTG-GTCCTCCTTA 187549 Query 147028 CCCATGTTGCGTCTCAAGTTGAGGACATCGTAAATTTCCGGATGCCAAGGCTCCACGTAT 147087 || |||| || ||| | || || ||| | | || | ||||| ||||| | ||| Sbjct 187548 CCGGTGTTTCGCTTCAGGCGGACGAACTCGAACACGTCGGCGTGCCACGGCTCGAGGTAC 187489 Query 147088 GCGGCGAGTGCGCCTTTTCGCTTACCG---CCCTGATCGACGTGGCGCACCATGTTATTG 147144 |||||| || || || ||||||||| ||||| || |||| ||| | |||||||| Sbjct 187488 ACGGCGAAGGCACCCTTACGCTTACCGCCACCCTGGTCCACGTAGCGGGCGGTGTTATTG 187429 Query 147145 AAGACTCGTAACATGGACACGAGGCCG 147171 || || || | ||||| |||||| ||| Sbjct 187428 AACACACGGAGCATGGGCACGAGACCG 187402 >seq21 Length=125516 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||| | || | || |||||||| || || ||||| || | Sbjct 54961 CCACCGCGAAGGCGGAGCACGAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCCGCG 55020 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| || |||||| |||| | |||||||| || || || Sbjct 55021 AGGGTGCGGCCCTCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGGGGG 55080 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || ||||||||| ||| || ||||| | |||| |||||| | |||||| Sbjct 55081 ATACCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGCCTCGACC 55140 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | || || ||||| || || || || ||||||||||| Sbjct 55141 TCGAGGGCGATGGTCTTACCGGTGAGGGTCTTCACGAAAATCTGCAT 55187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475498374945920