Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angomonas_20deanei_20[genbank_20GCA_5F001659865.1_202016-06-08] 408 sequences; 19,282,250 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq247 230 3e-55 seq106 104 3e-17 seq8 84.2 3e-11 >seq247 Length=361700 Score = 230 bits (254), Expect = 3e-55 Identities = 472/694 (68%), Gaps = 16/694 (2%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||| || || ||||| || | || || || || |||||||| || || | ||||| || Sbjct 170717 ATCAAAGTCCTCACCGCCAAGATGGGTGTCACCGGCGGTCGCCTTCACGTTGAAGATGCC 170658 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | || ||| | || | | ||||| |||||||| ||||| || || || ||||| || Sbjct 170657 GTCGTCGATGGTCAAAAGGGTCACATCGAACGTACCGCCACCGAGATCGAAGATGAGCAC 170598 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 ||| | ||| ||| | ||||| |||| |||||| || ||||| || || || || || Sbjct 170597 ATTCTTCTCGCCGTTGGTCTTCTTGTCGATACCGTAGGCAATAGCGGCGGCAGTAGGCTC 170538 Query 7636 ATTAATAATACGAAGACAGTTC-AGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 || |||||||| || || ||| | ||| ||||| | | || || || ||||| || | Sbjct 170537 GTTGATAATACGGAG-CACTTCCAAGCCGGCAATGGCGCCAGCGTCCTTGGTCGCCTGAC 170479 Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754 | || || ||||| |||||||| ||||| || | ||| || | |||| ||| |||| Sbjct 170478 GCTGAGAGTCGTTGAAGTAGGCGGGGACGGTGATGACGGCCTTGGTGATGGTCTCACCGC 170419 Query 7755 GATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCG 7814 || | ||||||| || ||||| ||| | || ||||| | |||||||| || | Sbjct 170418 AGTAGGCCTCCGCGACCTCCTTCATCTTGCTCAGCACCATGGCGGAAATCTCCTCCGGGA 170359 Query 7815 CAAACTGTTTC--GTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCG--CAGCA 7870 |||| || ||| | | | || || ||| | | || || || ||| | || Sbjct 170358 AGAACTCCTTGTGGTTGCCCTGGTAC--TCGACTACCACCACCGGCTTG-CCGTCCTTCA 170302 Query 7871 CCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAAC 7930 | | | ||||| | | ||| | ||||| ||| || | | |||| || Sbjct 170301 CGGTG----ACCTTGAAGGGCCAGTGCTTCATGTCGGACTGCAGATCGGGGTCGTCGTAC 170246 Query 7931 TTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGG 7990 || | || || | ||||| |||||||| | ||||| | |||||||||||| |||| Sbjct 170245 TTGCGGCCAATCATGCGCTTGGCATCAAAGATGGTGTTGTGGGGGTTCATGGCGACTTGG 170186 Query 7991 TTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGG 8050 ||||| || || || |||| || || || || | || || || ||||| || ||| Sbjct 170185 TTCTTGGCGGCATCACCGACGAGGCGCTCCGAAT---CGGTGAAAGCAACGTAGGACGGG 170129 Query 8051 GTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCG 8110 ||||| || || || |||||||| || ||||| || || |||| || | | || || Sbjct 170128 GTCGTACGGTTACCCTGGTCGTTGGCGATAATCTCCACCTGGTCATTCTTGAACACACCC 170069 Query 8111 ACGCACGAATACGTTGTTCCTAAATCAATACCGA 8144 || || || || ||||| || ||||||||||||| Sbjct 170068 ACACAAGAGTAGGTTGTACCCAAATCAATACCGA 170035 >seq106 Length=352803 Score = 104 bits (114), Expect = 3e-17 Identities = 170/245 (69%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 105825 GTGAACGTGTAACCCAATACCCCCAGCCCACTTACTGATACGCGCACACTCTTTTACTGT 105884 ||||||||| ||||||||||| || ||| ||||||||| || ||||| || | || Sbjct 187351 GTGAACGTGGAACCCAATACCACCGGCCGCCTTACTGATGGTGGCGCACTCCTTGAGGGT 187292 Query 105885 ATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGATGACATTTG 105944 |||||||| || |||||||| || ||||| | || | ||||| || || ||| || Sbjct 187291 GTCGTAAATGCCATCGATACTGTCGTCCTTCATGGCCACGAGGAAGCAGGAACTCATCTG 187232 Query 105945 TGGTCTGGGTGTACCAGCATTGAACAGAGTTGGTGTTGCATGAATGAACAAACCTTTCGA 106004 || | || ||||| || |||||||| || || || || || | || || || || Sbjct 187231 AGGCTTCGGGGTACCGGCGTTGAACAGGGTAGGGGTGGCGTGGGTAAAGAATCCCAAGGA 187172 Query 106005 TAACGCTTCGTATGTTTCCAGGACGTGATCAATATCGTGTCCATGAATACCAATAGCGAC 106064 | ||||| || | | | | || || | || ||||||||||||||| || || Sbjct 187171 CATGAGATCGTAGGTGCGGCGAATGCGCTCCATGTTGTTTCCATGAATACCAATCGCCAC 187112 Query 106065 GCGCA 106069 |||| Sbjct 187111 ACGCA 187107 >seq8 Length=342166 Score = 84.2 bits (92), Expect = 3e-11 Identities = 71/86 (83%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 184017 AACTCGG-CCAGAAATAATGAATCATGTTAAGAATAAGTCCCTTGATATGACTTCCATCG 184075 ||||||| ||||||| | |||||||| |||| ||| | |||||||||||| |||||| Sbjct 172494 AACTCGGGCCAGAAACAGTGAATCATATTAATAATTAATCCCTTGATATGGGAGCCATCG 172553 Query 184076 TTATCTGCATCGGTCATGATCATGAG 184101 | |||| ||||| |||||||||||| Sbjct 172554 TGATCTTGATCGGACATGATCATGAG 172579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635129560822720