Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angomonas_20deanei_20[genbank_20GCA_5F001659865.1_202016-06-08] 408 sequences; 19,282,250 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq106 251 8e-62 seq37 105 7e-18 seq65 96.9 4e-15 >seq106 Length=352803 Score = 251 bits (278), Expect = 8e-62 Identities = 371/516 (72%), Gaps = 12/516 (2%) Strand=Plus/Plus Query 53272 CTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAG 53331 |||||| |||||||| || |||||||||||||| ||||| | ||||||||| Sbjct 187183 CTTTACCCACGCCACCCCTACCCTGTTCAACGCCGGTACCCCGAAGCCTCAGATGAGTTC 187242 Query 53332 CTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGA 53391 ||||||||| ||||| |||||||| ||| ||||| ||||| ||||| || |||||||| Sbjct 187243 CTGCTTCCTCGTGGCCATGAAGGACGACAGTATCGATGGCATTTACGACACCCTCAAGGA 187302 Query 53392 GTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCG-AACGTCCGTG 53450 ||| ||| |||| ||| | | |||||||| || ||||| | || ||| |||| Sbjct 187303 GTGCGCCACCATCAGTAAGGCGGCCGGTGGTATTGGGTTCCAC-GTTCACAACATCCGCT 187361 Query 53451 CGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCC 53510 | ||| | ||| || |||||||| | || | || ||||||| ||||||| Sbjct 187362 CTTCCGGTAGTTACATCGCCGGTACGAACGGTACCTCCAACGGTCTCGTGCCCATGCTCC 187421 Query 53511 GCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGT 53570 | || ||||| ||||| ||||| ||||| |||||||||| || ||||| ||||| | | Sbjct 187422 GTGTGTTCAATAACACCGCCCGCTACGTGGACCAGGGTGGCGGTAAGCGTAAGGGTGCCT 187481 Query 53571 TCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGA 53630 ||||| | |||||||||||||||||||||||| | | ||||| || ||| | || Sbjct 187482 TCGCCGTGTACCTCGAGCCGTGGCACGCCGACGTGTTCGAGTTCGTCCGCCTGAAGC-GA 187540 Query 53631 ATCA-GGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGAC 53689 | || ||| | || || || ||| || |||||| || || |||||||| || Sbjct 187541 AACACCGGTAAGGAGGACCAACGTGCCCGCGATCTGTTTTACGCCCTTTGGATTCCTGAT 187600 Query 53690 CTCTTCATGCAAAAGGTGGAGAAGGACGAGG---AGTGGTACCTGATGTGCCCGAACGAG 53746 ||||||||| ||| | ||||| |||| ||||| |||||| ||| |||| | Sbjct 187601 CTCTTCATG---AAGCGTGTCAAGGAGGAGGGACAGTGGACGCTGATGGACCCCAACGTG 187657 Query 53747 TGCCCCGGCCTCCAGGGTGT-CTACGGTGAGGAGTT 53781 ||| | ||||| || | | |||||| |||||||| Sbjct 187658 TGCACAGGCCT-GAGCGACTGCTACGGCGAGGAGTT 187692 Score = 129 bits (142), Expect = 6e-25 Identities = 303/449 (67%), Gaps = 9/449 (2%) Strand=Plus/Plus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 || |||||||| ||| ||||||| ||||| ||||| || || ||||||| |||| ||| Sbjct 188378 CGTAACTCCCTCCTCCTGGCGCCCATGCCCACCGCCTCCACCTCTCAGATTCTGGGTAAC 188437 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCT-AGCAGGTGA 55602 |||||| |||||||| | |||| | ||||| ||| | || || || ||| ||||| Sbjct 188438 AACGAGTGCTTCGAGCCCTTCACGTCGAACATTTACGTCCGTCGTGTGCTGAGC-GGTGA 188496 Query 55603 GTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCC 55662 ||| || | |||||| | ||||| | |||||| ||| |||| ||||||| Sbjct 188497 GTTCCCGGTGGTGAACAAGTATCTCGTGATGGACCTCATCAAGCGCAACCTGTGGAACGA 188556 Query 55663 GCAGATCAAGACGGATATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGGAGATT--CCT 55720 ||||| | || || | | || |||||| | ||| | | || Sbjct 188557 TGAGATCCGTAACGAAATCATCACCTTCAACGGCTCCGTCGCTGGTGTGGCGGGTATCCC 188616 Query 55721 CTGCGTC-TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGA 55779 | || | |||||||| | ||||| || ||||||||||| | ||| ||||| || Sbjct 188617 CGACGACATCAAGGAGCTCTACCGCACCGTGTGGGAGATCTCCCAGCGTCAGCTGATCGA 188676 Query 55780 CATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGA 55839 ||| || | || | ||| || |||||||| ||||| ||||| ||| | | || Sbjct 188677 TATGGCCGCGGCCCGCGCCAAGTATATTGACCAGTCGCAGTCCATGAACCTCTACCTCGA 188736 Query 55840 GA-ATCCTTCACTGGCCAAGT-TGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTC 55897 || ||| | | |||| || | | ||| |||||||| || | ||| || ||||| Sbjct 188737 GAGCCCCTCCTCCGGCC--GTATCACCTCCATGCACTTCCACTGCTGGCAGTCTGGACTG 188794 Query 55898 AAGACGGGTATGTACTATCTGCGGACCCG 55926 |||||||| |||||||| || || ||||| Sbjct 188795 AAGACGGGCATGTACTACCTCCGCACCCG 188823 >seq37 Length=265056 Score = 105 bits (116), Expect = 7e-18 Identities = 200/289 (69%), Gaps = 13/289 (4%) Strand=Plus/Minus Query 124551 TGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTG 124610 ||||||| | | ||||||| | | ||||||||||| ||||| ||||| || || | Sbjct 164353 TGCTGCATGAGCAACCACATGCCGTAGACGTAGTCCTTGGCGTGACCCCAATCACGAAGG 164294 Query 124611 GCATCCAGGTTTCCGAG------CTCGATTGGCTTGGCCGT-CTTGTTCCACTCCGCCAA 124663 |||| || ||| ||||| || | ||||| |||| ||| | | | ||| Sbjct 164293 GCATTCACGTTACCGAGGAGCAGCTGTTTCTGCTTG-CCGTGCTTAATGCGGGCGGCCGC 164235 Query 124664 ACCCAGTGTAATCTTGCGCGTCACAAAC-TCGGAACCGCGTCGCTCAGACTCGTGGTTGA 124722 || | || ||||| | ||| || || || | || || || || |||||||||| Sbjct 164234 AC---GGGTGATCTTTCTCGTGACGAAGGTCTGT-CCTCGACGGGGGGATTCGTGGTTGA 164179 Query 124723 ACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAAT 124782 | ||||| || | ||||| |||| ||||| |||||||||||||| ||| ||||| Sbjct 164178 AGAGAATACCGTTGCACGCGTACATGCCGTAGGACTCGCGGTAGTTCTTCACTATCCAGA 164119 Query 124783 ACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGT 124831 | | | ||||||| || |||| ||||| ||||||||||| ||||| Sbjct 164118 AGGCGTACAGCTTGGCGACCGCATAAGGGCTGCGGGGGTAGAAGGGGGT 164070 >seq65 Length=122790 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/226 (71%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 152080 CCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCC 152139 || ||||| || ||| |||||||||| | ||||| | || ||| || || ||| Sbjct 64242 CCGAACTGACCCTCGGGGACGAGGAGGTTAATATTGTTCCCACCAGTGAAGTTTTGGGCC 64183 Query 152140 AAATTCACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCG 152199 | ||||||||||| ||||||| | |||||||||||| | || | ||||| Sbjct 64182 ATCTTCACAATCGTCTCCTGCAGCGACATCTCACCGTGGTGAAAGGCGGAGACCTCCGAA 64123 Query 152200 ATGTATCCCGCCAACTGCGCCACCTTCATGTCCGTCG-TCAGGTTCTTCTTGAGACAG-G 152257 ||||| |||| || ||||||||||||| || ||| | ||||||||||| ||| | Sbjct 64122 ATGTAACCCGACAGCTGCGCCACCTTCGCCGCC-TCGCTGTTATTCTTCTTGAG-CAGCG 64065 Query 152258 CGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTG 152303 | | | | ||| |||||||| || ||||| || ||||| |||| Sbjct 64064 CCCACAGAATCTTACGCTGGGAGGGCTTCAACCCATCCACGGCGTG 64019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547213209198400