Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angomonas_20desouzai_20[genbank_20GCA_5F000482185.1_202013-10-25] 7,953 sequences; 24,250,851 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq5385 86.0 5e-12 seq4492 86.0 5e-12 seq153 84.2 2e-11 >seq5385 Length=1056 Score = 86.0 bits (94), Expect = 5e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 24031 CCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAG 24090 || |||| |||||| ||| ||||||||||||| | || || |||||| ||||| | Sbjct 27 CCCTCGAGGTCGAGTCCAGCGACACCATCGAGAACGTGAAGGCTAAGATTCAGGACAAGG 86 Query 24091 AAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACA 24150 | ||||| || || || || ||| | || || | || ||| ||||| |||||||| | | Sbjct 87 AGGGCATCCCCCCGGACCAGCAGCGCCTCATCTTCGCCGGTAAGCAGCTCGAAGAAGGCC 146 Query 24151 GAAACGTCAGCGATTATAACATTCAAAAAGAATCTAC 24187 | | | || ||| || ||||| || || || || || Sbjct 147 GCACCCTCGCCGACTACAACATCCAGAAGGAGTCCAC 183 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | || || || | || || |||| |||||| ||| | Sbjct 672 ATGCAAATTTTCGTGAAGACCCTCACCGGTAAGACCATCGCCCTCGAGGTCGAGTCCAGC 731 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || |||||| ||||| || ||||| || || || || Sbjct 732 GACACCATCGAGAACGTGAAGGCTAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAG 791 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || ||| ||||| |||||||| | | | | || ||| || ||| Sbjct 792 CAGCGCCTCATCTTCGCCGGTAAGCAGCTCGAAGAAGGTCGCACCCTCGCCGACTACAAC 851 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || || || Sbjct 852 ATCCAGAAGGAGTCCAC 868 >seq4492 Length=1347 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || |||||| | || || || || | || || || | || || |||| |||||| || Sbjct 360 AATATGCAAATTTTCGTGAAGACCCTCACCGGCAAGACCATCGCCCTCGAGGTCGAGTCC 301 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 | ||||||||||||| | || || |||||| ||||| || ||||| || || || Sbjct 300 AGCGACACCATCGAGAACGTGAAGGCTAAGATTCAGGACAAGGAGGGCATCCCCCCGGAC 241 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| | || || | || ||| ||||| || ||||| | | | | | || ||| || Sbjct 240 CAGCAGCGCCTCATCTTCGCCGGTAAGCAGCTGGAAGAGGGCCGCACCCTCGCCGACTAC 181 Query 24168 AACATTCAAAAAGAATCTAC 24187 ||||| || || || || || Sbjct 180 AACATCCAGAAGGAGTCCAC 161 >seq153 Length=16899 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | || || || | || || |||| |||||| ||| | Sbjct 9418 ATGCAAATCTTCGTGAAGACCCTTACCGGCAAGACCATCGCCCTCGAGGTCGAGTCCAGC 9477 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || |||||| ||||| || ||||| || || || || Sbjct 9478 GACACCATCGAGAACGTGAAGGCTAAGATTCAGGACAAGGAGGGCATCCCCCCGGACCAG 9537 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | | ||| ||||| ||||| || | | | | | || ||| || ||| Sbjct 9538 CAGCGCCTCATCTTTGCCGGTAAGCAGCTCGAGGAGGGCCGCACCCTCGCCGACTACAAC 9597 Query 24171 ATTCAAAAAGAATCTACAATTCAT 24194 || || || || || || ||||| Sbjct 9598 ATCCAGAAGGAGTCCACCCTTCAT 9621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429894327512715