Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Angomonas_20desouzai_20[genbank_20GCA_5F000482185.1_202013-10-25] 7,953 sequences; 24,250,851 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq753 176 6e-39 seq3286 141 1e-28 seq3868 86.0 8e-12 seq1774 86.0 8e-12 >seq753 Length=7390 Score = 176 bits (194), Expect = 6e-39 Identities = 503/770 (65%), Gaps = 5/770 (1%) Strand=Plus/Plus Query 110646 TGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCA 110705 ||||||| ||||| |||| ||||| |||| ||||| || || || | | | Sbjct 2795 TGAGGTCCTTGACAAGGTATTTGTTCACAACCGGGAACTCCCCACTCAGCGTACGGCGGA 2854 Query 110706 GGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 110765 ||| ||||| || ||| | || || ||||| ||||| ||||| | ||||| ||||| Sbjct 2855 CGTAAATGTTGGTGGTGAAGGGCTCGAAGCACTCATTGTTACCGAGAATTTGACTGGTGG 2914 Query 110766 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTT 110825 |||| || ||||| || |||| ||| ||| ||| || | ||| || ||||| ||| | Sbjct 2915 AGGCGGTGGGCATCGGCGCCACCAACAGAGAGTTTCGCATACCGGTCGTCTTGACGCGCT 2974 Query 110826 CCTTGAGAACATCCCAGTCGTAGTTGA-GCTT---GGTTTCACCTTCCCACATGTCAAAC 110881 |||| || | ||||||| || | ||| || ||| || |||| | || ||| Sbjct 2975 CCTTCAGGGCGTCCCAGTTCCAGCGGCCGCTCACCGGCTTCTTCT-CCCAGAGATCGAAC 3033 Query 110882 TGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCA 110941 || || | |||||||| ||||| || |||||||||||| | || | | | Sbjct 3034 TGCAGAAGGCCTTGGGAGGCGGGGCTGCCGGGAAAGGTTTCATACGGTCCCTCCACCGCC 3093 Query 110942 GCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTC 111001 ||||| || | | ||||| | |||| || ||||| || ||||| | ||| Sbjct 3094 GCCAAGTCCACGGAGGACTCCACCGCGGCGTAGTAGATGGTCTCGAAGATGTCCTCGTTC 3153 Query 111002 ATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGA 111061 | | || || || || || | | ||| | |||||| | ||||| | Sbjct 3154 AACCGCTGCGCCTCCTCGCTCGTGAAGGGGAGGCGAAGGAGAATAAAGGCGTCCGCCAAC 3213 Query 111062 CCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACG 111121 || || || || | || | || | || |||||| ||| || || || || ||| Sbjct 3214 CCCTGCACGCCGAGGCCGACCGGGCGGTTTCGCATGTTACTGCGTCTGGCCGTTTCCACG 3273 Query 111122 GGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCA 111181 || || | || | ||||||||||||||| ||||| | ||| || ||| |||| || Sbjct 3274 GGGTAGTAGTTGCGGTCAATGACTCGGTTGAGATTGTAGGTCACGTCCTTGGTGACCTCG 3333 Query 111182 TGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATT 111241 | || || | | ||||| || |||| | || | || |||||||| Sbjct 3334 TAGAGCTTCTGGTGGTCAAAGACGCCCTTCTCGGTGTCCACGAAGCGGGGGAGGGCGATG 3393 Query 111242 GATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACAT 111301 || ||||| ||||| || |||||||| ||||| |||||||| | ||| || || || Sbjct 3394 GAGGCCAAGTTGCACACCGCCGTCTCGTCCTTGCTGGTGTACTCCATAATCTCGGTGCAC 3453 Query 111302 AAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCC 111361 | |||||| | ||| || || |||| ||| || ||||| ||| |||||| | ||| Sbjct 3454 AGGTTGGAGCACTTGATGGTGCCCAGATTTTTCTGGTTGGACTTTCGGTTGCAAGAGTCC 3513 Query 111362 TTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGC 111411 ||||| |||||| | || || |||||| ||| || | ||||| || Sbjct 3514 TTGTACAGCATGAAAGGGACACCGGTCTCCACCTGGGACTCCAGAATGGC 3563 >seq3286 Length=1922 Score = 141 bits (156), Expect = 1e-28 Identities = 308/450 (68%), Gaps = 17/450 (4%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| || ||| |||||| |||||||||||||| ||| ||| || | ||||| Sbjct 1530 TAGTCACCAACCTTCTTCTCGAAGAAGTTGGTCTTGCCAGGGAGGGAGATCATCTCCATG 1471 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACC-CCAACTTGTTTGAGGAGACG 122489 ||||| || || ||| ||||||| | || | || | |||| || ||||| Sbjct 1470 AAGTCGAAGGGGTTCGTCGCGTTGTAG-TGCTTCGCCTCGCCAAGGGAGACCAGCAGACG 1412 Query 122490 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 122549 |||| ||| |||||||||||| | |||| |||| ||||||||||| || ||| Sbjct 1411 GTCCGCCACGAACTCAATGTACTGGCTCATCATCTCCGAGTTCATACCAATCAGGCGCAC 1352 Query 122550 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG----G 122605 ||||| | || |||||||| | ||||| || || || || || | | |||| | Sbjct 1351 GGGGAGGGACTCGCAGATGAACTCCTTCTCGATGTCCACGGCATCGGTGATGATGTTCAG 1292 Query 122606 CGTG-GATAGTTTCGGTAG-TGGGTCT--ATTACGCAAAGTCTTGAAGAGCTC-CACGGC 122660 | | | | | || || | | ||| || || | ||| | ||| |||| | Sbjct 1291 CACGCGCTCGCG-CGACAGCTTGTTCTTGATGTGGC----TGTTGTACAGCAGGCACG-C 1238 Query 122661 AAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGG 122720 ||| ||| ||| |||||||| || |||||||| || || || |||| || || || Sbjct 1237 AAAGTCCGTGTGCAGACCCTCGTCACGGGAAATCAGCTCGTTGCTGAAGGTCAGGCCGGG 1178 Query 122721 CATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACC 122780 ||| | || |||||||||| ||| | || |||||||| || |||||||||||||| || Sbjct 1177 CATCACGCCGCGCTTCTTCAGCCAGAAGATCGCGCAGAAGGAGCCGGAGAAGAAGATGCC 1118 Query 122781 CTCCACACACGCAAACGCAAAAAGGCGTTC 122810 |||||| ||||||| | | ||||| || Sbjct 1117 CTCCACCGCCGCAAACCCGAGCAGGCGCTC 1088 >seq3868 Length=1597 Score = 86.0 bits (94), Expect = 8e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||| ||| ||||||| ||| | ||| ||| ||||||||||||| |||| Sbjct 1340 GCTCCTATAGTGTAGCGGTTATCACTTCGGATTCTGATTCCGACAACCCTGGTTCGAATC 1281 Query 145342 CAGGTAGGAG 145351 |||||||||| Sbjct 1280 CAGGTAGGAG 1271 >seq1774 Length=3611 Score = 86.0 bits (94), Expect = 8e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||| ||| ||||||| ||| | ||| ||| ||||||||||||| |||| Sbjct 3488 GCTCCTATAGTGTAGCGGTTATCACTTCGGATTCTGATTCCGACAACCCTGGTTCGAATC 3547 Query 145342 CAGGTAGGAG 145351 |||||||||| Sbjct 3548 CAGGTAGGAG 3557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627969565768800