Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq1779 154 3e-32 seq386 87.8 4e-12 >seq1779 Length=53708 Score = 154 bits (170), Expect = 3e-32 Identities = 323/474 (68%), Gaps = 13/474 (3%) Strand=Plus/Plus Query 230170 TCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGT 230229 || || |||||||| ||||| || | | ||||| || || | |||||||| || Sbjct 28805 TCCTTCGCCGAGCGCCTCGTTGCGTTCGCCGCGGTTGAGGGCATCTTCTTTTCCGGCAGC 28864 Query 230230 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 230289 |||||| ||||||| |||||| ||| || |||||||||||||| | || ||| Sbjct 28865 TTCTGCTCCATCTTCTGGCTGAAGAAGCGCGGCCTGATGCCTGGCCTCACCTTCTCCAAC 28924 Query 230290 GAGTTCATCAGTCGCGACGAGGGTCTCCATCAAC-AGTTCGGCGAGCTTA-TGTATTCAA 230347 ||| | ||| || |||||||| ||||| || | | |||| || || | |||| | Sbjct 28925 GAGCTGATCTCGCGTGACGAGGGCCTCCA-CACCGACTTCG-CGTGCATGCTGTACGAGA 28982 Query 230348 AGCTCCAG---AACAAGCTACCATTCGAGACGGTCAAAC---AAATCATTACAGAAGCAG 230401 || || | |||||||| |||| | || | | |||||| || || | Sbjct 28983 AGTACCTGGTGAACAAGCTGAG---CGAGGAGCGCATCCGCGAGATCATTGGCGACGCCG 29039 Query 230402 TTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGCATGAACG 230461 | | | ||| ||||||||||| || ||||| | || || || || || |||||| Sbjct 29040 TGGCGATCGAGAAGGAGTTCATCTGCGACGCGCTCCCCGTGCGTCTGATCGGAATGAACT 29099 Query 230462 CTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTT 230521 | || || |||| ||||||||||| ||||| || ||||| | | | | ||||| Sbjct 29100 CCGATCTGATGGCCCAGTACATCGAGTTCGTTGCGGACCGTCTGCTGATCACGCTTGGCC 29159 Query 230522 ACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAG 230581 |||||| | | | | | ||||||||||| | || |||||| | || || ||||||| Sbjct 29160 ACGAGACGATTTTCGGCGCCAAGAACCCCTTCGACTTCATGGAGATGATCTCCCTTCAAG 29219 Query 230582 GGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGA 230635 | ||||| ||||||||||| ||| ||| | || || |||| | | || |||| Sbjct 29220 GCAAGACGAACTTCTTCGAGAAGAAGGTCGGCGAGTACCAGAAGGCCGGCGTGA 29273 >seq386 Length=26907 Score = 87.8 bits (96), Expect = 4e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 61089 CAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAAGGACT 61148 ||||| || || || || ||||| || || || || || |||||||| || || | ||| Sbjct 13140 CAAGCCTCCACCTCGGAGCTGTACGGCAAGGTCCAGGAGATTCCTCAGACGGAGACGACC 13199 Query 61149 CCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACTATACGCTTACTGGATTTGTAAA 61208 || || || || |||||||| || | || || || || ||||||||||||||| || Sbjct 13200 CCCTTCTACCCCCGTAGCCCCTACGCAGTCGCCAAGCTGTACGCTTACTGGATTACTATC 13259 Query 61209 AATTACCGCGAGTCGTATGGAATGTT 61234 || ||||| ||| | || || || || Sbjct 13260 AACTACCGTGAGGCCTACGGTATCTT 13285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057793423597280