Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1779 127 2e-24 >seq1779 Length=53708 Score = 127 bits (140), Expect = 2e-24 Identities = 306/459 (67%), Gaps = 13/459 (3%) Strand=Plus/Minus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 ||| || || ||||| ||| || | |||||||| | ||| || ||||| || | Sbjct 28976 ACAGCATGCACGCGAAGTCGGTGTGGAGGCCCTCGTCACGCGAGATCAGCTCGTTGGAGA 28917 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | || | || |||||| || || ||||| | ||| || || | | ||| || | Sbjct 28916 AGGTGAGGCCAGGCATCAGGCCGCGCTTCTTCAGCCAGAAGATGGAGCAGAAGCTGCCGG 28857 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135 ||||||| || ||||| || | || ||||| | | || |||||| | | | | Sbjct 28856 AAAAGAAGATGCCCTCAACCGCGGCGAACGCAACGAGGCGCTCGGCGAAGGAGG-----T 28802 Query 17136 TGTTACGA----ATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTT 17191 ||| ||| ||||| | ||||||| || || ||| ||||| ||||| Sbjct 28801 TGT--CGACTTGATCCAGCGCATGGCCCACTCCGCCTTCCGCTGGATGCAGGGAATCGTC 28744 Query 17192 TCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAG-GTCGATTATATACGTATCGATGAG 17250 || || |||| ||| | || || || || | |||| || || || ||||| || Sbjct 28743 TCGATCGCCTCAAACAGGCGCTGCTTCTCG-GTGGTGTCGCGGATGTAGGTCTCGATCAG 28685 Query 17251 TAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCG 17310 | ||||||| ||||| ||| ||||||||||| || ||||| || ||||| ||||| || Sbjct 28684 CATGCTGTACGTTTCGCTGTGGATGTTCTCCATCGCGATCTGGAAGCCGTAGAAGCAGCG 28625 Query 17311 GGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCC 17370 ||| || | || | || || ||| || || || || || || ||||||||| Sbjct 28624 GGCCTCGGGGATCTTGACGTCGGTCATGAAGCGCTCGGCGAGGTTCTCAAGCACGATGCC 28565 Query 17371 GTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAA 17409 |||||| |||||||| ||||| | || ||||| ||||| Sbjct 28564 GTCGCTGGCGGCGAAGAACGCAAGGATGTGCTTGATGAA 28526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517531005214080