Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1779 486 2e-132 seq781 125 7e-24 seq1639 123 3e-23 seq1631 116 4e-21 >seq1779 Length=53708 Score = 486 bits (538), Expect = 2e-132 Identities = 589/798 (74%), Gaps = 12/798 (2%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||||||| || ||||| | ||| |||||| | |||||||| || |||||| Sbjct 28358 GAGCCGCTGCTGCGTGAAAACCCTCACCGCTTCGTGCTCTTCCCCATCACCTATCCGGAC 28417 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || ||| | |||||| |||||||| ||||||||||| | |||||| | |||||| Sbjct 28418 ATCTGGAAGAAGTACAAGGAGGCCGAGAGCTCGTTCTGGACGATGGAGGAGATCGACCTG 28477 Query 116696 TCCAAGGACACGAGCGACTGGGA-GCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 || |||| || |||||||| |||| |||||||| |||||||||| ||||||||||| Sbjct 28478 GGCAGCGACATGAAGGACTGGGACGCGC-TGAACGACGACGAGCGCCACTTCATCAAGCA 28536 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTT 116814 | | || || || ||||||||||||||||||||||| ||||| || | |||||| || Sbjct 28537 CATCCTTGCGTTCTTCGCCGCCAGCGACGGCATCGTGCTTGAGAACCTCGCCGAGCGCTT 28596 Query 116815 CGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGA 116874 | || || || | ||||||| || |||||||||||||| |||||||| ||||| Sbjct 28597 CATGACCGACGTCAAGATCCCCGAGGCCCGCTGCTTCTACGGCTTCCAGATCGCGATGGA 28656 Query 116875 GAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGA 116934 |||| | ||| |||| ||| | || ||||| || ||| | ||| | || Sbjct 28657 GAACATCCACAGCGAAACGTACAGCATGCTGATCGAGACCTACATCCGCGACACCACCGA 28716 Query 116935 GAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTG 116994 ||||| || |||| | || ||||||||||| || ||| || | |||||| ||||| Sbjct 28717 GAAGCAGCGCCTGTTTGAGGCGATCGAGACGATTCCCTGCATCCAGCGGAAGGCGGAGTG 28776 Query 116995 GGCGCTGCGCTGGATC--GCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTC 117052 ||| ||||||||||| | || || || |||||| ||||||||| || || ||| Sbjct 28777 GGCCATGCGCTGGATCAAGTCGACA-----ACCTCCTTCGCCGAGCGCCTCGTTGCGTTC 28831 Query 117053 GCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAA 117112 || || || |||||| |||||||||| ||||| ||| | |||| || ||||| ||||| Sbjct 28832 GCCGCGGTTGAGGGCATCTTCTTTTCCGGCAGCTTCTGCTCCATCTTCTGGCTGAAGAAG 28891 Query 117113 CGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTG 117172 |||||||| ||||| ||||| || ||| ||||||||| ||||| | |||||||| || Sbjct 28892 CGCGGCCTGATGCCTGGCCTCACCTTCTCCAACGAGCTGATCTCGCGTGACGAGGGCCTC 28951 Query 117173 CATTGCGACTTTGCCTGTTTGCTGTTC---AAGCATTTGGTGCAGCGACCGAGCGCGGCG 117229 || |||||| || || |||||| | ||| | ||||| | | ||||| || | Sbjct 28952 CACACCGACTTCGCGTGCATGCTGTACGAGAAGTACCTGGTGAACAAGCTGAGCGAGGAG 29011 Query 117230 CGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCG 117289 ||| || | |||||| | |||||| || || |||||| || ||| || ||| ||| Sbjct 29012 CGCATCCGCGAGATCATTGGCGACGCCGTGGCGATCGAGAAGGAGTTCATCTGCGACGCG 29071 Query 117290 CTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTC 117349 || || ||||||||| | ||| | || | ||| |||| | || |||||||||||||| Sbjct 29072 CTCCCCGTGCGTCTGATCGGAATGAACTCCGATCTGATGGCCCAGTACATCGAGTTCGTT 29131 Query 117350 GCCGACAGGCTGCTGCTC 117367 || ||| | |||||| || Sbjct 29132 GCGGACCGTCTGCTGATC 29149 >seq781 Length=13536 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || || || || || | | || ||||| || | Sbjct 13090 ATGCAGATCTTCGTGAAGACGCTGACCGGGAAGACGATTGCGCTTGAGGTCGAGGCGTCG 13149 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || || | ||||| ||||||||||| ||||||| Sbjct 13150 GACACGATCGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 13208 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || || || |||||||| || | ||||| || |||||||| Sbjct 13209 GCAGCGCCTGATCTTTGCCGGGAAGCAGCTGGAGGAGGGCCGCACGCTTGCGGACTACAA 13268 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| | |||||||| || ||| ||||| || | || || Sbjct 13269 CATCCAGAAGGAGTCGACGCTGCACCTCGTGCTGCGCCTGCGCGGTGG 13316 Score = 122 bits (134), Expect = 9e-23 Identities = 168/232 (72%), Gaps = 5/232 (2%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCA---TCACCGTCGACGTCGAAGCC 40746 ||||| || || ||||| |||||||| | || || | | | | || ||||| || Sbjct 12859 ATGCAGATCTTTGTAAAGACGCTCACAGACAGAAAGACGCTTGCGCTTGAGGTCGAGGCG 12918 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | |||| | |||| || || | ||||| ||||||||||| |||| Sbjct 12919 TCGGACACGATCGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGA 12977 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || || |||| || || || |||||||| || | ||||| || ||||| Sbjct 12978 CCAGCAGCGCCTGATCTTTGCCGGGAAGCAGCTGGAGGAGGGCCGCACGCTTGCGGACTA 13037 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||||| | |||||||| || ||| ||||| || | |||||| Sbjct 13038 CAACATCCAGAAGGAGTCGACGCTGCACCTCGTGCTGCGCCTGCGCGGCGGC 13089 >seq1639 Length=27095 Score = 123 bits (136), Expect = 3e-23 Identities = 101/123 (82%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||||||| |||||||||| || || |||| ||| ||||| |||||||| Sbjct 10 GACAAGGAGGGCATCCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAG 69 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | ||||| || ||||||||||||||||||||| |||||||||| || ||| | Sbjct 70 GAGGGCCGCACGCTGGCTGACTACAACATCCAGAAGGAGTCCACGCTGCACCTTGTGCTC 129 Query 40903 CGC 40905 ||| Sbjct 130 CGC 132 Score = 123 bits (136), Expect = 3e-23 Identities = 101/123 (82%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||||||| |||||||||| || || |||| ||| ||||| |||||||| Sbjct 2827 GACAAGGAGGGCATCCCCCCGGACCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAG 2886 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | ||||| || ||||||||||||||||||||| |||||||||| || ||| | Sbjct 2887 GAGGGCCGCACGCTGGCTGACTACAACATCCAGAAGGAGTCCACGCTGCACCTTGTGCTC 2946 Query 40903 CGC 40905 ||| Sbjct 2947 CGC 2949 Score = 84.2 bits (92), Expect = 2e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 40702 GTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAA 40761 ||||| || ||||| ||||| || ||| | | || ||||| ||| | |||| | | Sbjct 1192 GTAAAGACCCTCACCGGCAAGACGATCGCACTGGAGGTCGAGGCCTCTGACACGATCGAG 1251 Query 40762 ACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATC 40821 | |||||| || || | ||||| | | |||||||| |||| ||||| || || || Sbjct 1252 AATGTCAAGGCCAAGATCCAGGACAAGGTGCGCATCCCCCCGGAGCAGCAGCGCCTGATG 1311 Query 40822 TACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAG 40881 | ||| |||| | ||| || || | ||||| || ||||||||||| | || ||| Sbjct 1312 TTCGCTGGCATGCTGCTAGAGGAGGGCCGCACGCTGGCTGACTACAACATTGACAATGAG 1371 Query 40882 GCCACGCTG 40890 |||||||| Sbjct 1372 TCCACGCTG 1380 >seq1631 Length=42244 Score = 116 bits (128), Expect = 4e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| ||||||||||| |||||||||| || || |||| |||||||| |||||||| Sbjct 38192 GACAAGGAGGGCATCCCGCCGGACCAGCAGCGCCTGATCTTTGCGGGCAAGCAGCTGGAG 38251 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | ||||| || ||||||||||||||||||||| | ||| |||| || ||| | Sbjct 38252 GAGGGCCGCACGCTTGCGGACTACAACATCCAGAAGGAGTCGACGTTGCACCTCGTGCTC 38311 Query 40903 CGCTTGAGGGGCGG 40916 ||| || |||| || Sbjct 38312 CGCCTGCGGGGAGG 38325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515204670818560