Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq1815 113 3e-20 >seq1815 Length=86323 Score = 113 bits (124), Expect = 3e-20 Identities = 406/626 (65%), Gaps = 8/626 (1%) Strand=Plus/Minus Query 96995 CAAACTTTAGTGTTGGGAAAGGCCTGGGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAA 97054 ||||||| || |||||||| | || ||| || | ||| || || ||||||| Sbjct 2770 CAAACTTGAGGAATGGGAAAGCTCGAGGCACTCGAGTCAACTGTTCACGCAGTGCATCAA 2711 Query 97055 TGTGATTCACATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAAT 97114 ||||| ||| | || |||||||| | |||||| | |||||||| ||| | || | Sbjct 2710 CATGATTTCGATACACATGTGCATCTCCGAGAGTGTGTACGAATTCTCCTGGA-CGAAGT 2652 Query 97115 C-AGTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACC 97173 | || | | || | | || | ||||| ||| || ||||| || || || Sbjct 2651 CCAGATGCTTTTGCAAGTAGGATTGTGAGAAGAGAGTAGGATGCGATGTTGAATGGAACA 2592 Query 97174 CCTAGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACA 97233 || | ||||||||| || ||||| || | | || || || | ||| | | ||| Sbjct 2591 CCCAAACCCATATCACAAGACCTTTGGTACATCATGCAAGACAGTTCACCACGAGAAACA 2532 Query 97234 TAAAACTGACTCAATACATGACAGGGGGGCAACGCCATTTT-TGGAACATCTAAGACATT 97292 |||||||| || | ||||| || || | |||||||| | || | | || ||| Sbjct 2531 TAAAACTGGGCCATGATGTGACACGGAGGAAGTGCCATTTTGTTGATCG-CGCAGGGATT 2473 Query 97293 CCAAGCACACATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTG 97352 |||||| | | | |||| | ||| ||||| ||| || ||| || | || ||||| Sbjct 2472 CCAAGCTGAGAGAAGGATTCGCCGATCAGTTGGATTTTTGCGTAGAGTTTCAACGATCTG 2413 Query 97353 CTTTAATTGATCAACGCCTTCTCCACCATAATTGTGCTTAAGACCTTGATATTCTGCTCC 97412 ||| | |||||| || || | ||| || || | | | |||| || || ||||| Sbjct 2412 CTTGATTTGATCTACACCCTTGCCATTGTAGTTCGCATCACGCCCTTCGTACTCAGCTCC 2353 Query 97413 AAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAA 97472 || ||||||||||| || |||||||||||||| | || || |||| | || || Sbjct 2352 GAAGTGCCTCCATTGAAAGCCATAAACAGGTCCCAAATCGCCAACTTCGTTGTCTGTGAG 2293 Query 97473 ACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGCACACC--AGAT 97530 |||| | |||| | | | | | || ||||| | ||||| || | ||| || | Sbjct 2292 ACCACGGCTATCCAGAAATGCTCGTGACCCATTGTCGTCCCATATCTTCACTCCTTTGTC 2233 Query 97531 GCTGCAAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTCTTCCACAACA 97590 || ||| | ||| || || ||| | | |||||||| | |||||| |||| Sbjct 2232 ACT-CAACAGCCGTGC-ATCTGTTTCTCCGCGAAGGAACCACAAGAGTTCTTCGCAAACA 2175 Query 97591 CCTCTCCAAAATACTCTCTTAGTTGT 97616 |||| |||||| || | || ||||| Sbjct 2174 CCTCGCCAAAACACACGTTTCGTTGT 2149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346774465173920