Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1639 96.9 4e-15 seq781 91.5 2e-13 seq2043 82.4 9e-11 seq1135 82.4 9e-11 >seq1639 Length=27095 Score = 96.9 bits (106), Expect = 4e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 42952 ATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAAT 43011 ||| |||||||| | || | ||| | |||| ||| |||||| || || ||||| | Sbjct 2965 ATTATCCTCCTCGGAGGCGGAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGT 2906 Query 43012 CAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGG 43071 ||||||| || || | || || |||||||| |||||||| || || ||||||||||| | Sbjct 2905 CAGCCAGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCG 2846 Query 43072 CCGGCACGCTCTCCTTGTCCATGATTTT 43099 || | || |||||||||| ||| || Sbjct 2845 GGGGGATGCCCTCCTTGTCCTGGATCTT 2818 Score = 84.2 bits (92), Expect = 3e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 42981 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 43040 |||| ||| |||||| || || ||||| |||||||| || || | || || |||||| Sbjct 119 TGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGCGTGCGGCCCTCCTCCAGCTGC 60 Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCC 43091 || || ||||| || || ||||||||||| | || | || |||||||||| Sbjct 59 TTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC 9 >seq781 Length=13536 Score = 91.5 bits (100), Expect = 2e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||| | |||| || |||||| || || ||||| || || || || || | Sbjct 13304 CGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCC 13245 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || || || || || ||||||||||| | ||| | || ||||||| Sbjct 13244 TCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 13185 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| ||| || || | || | | |||||| || || || || | || || Sbjct 13184 TCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCCGACGCCTCGACCTCAAGCGCAATC 13125 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || || |||||||| || ||||| ||||| Sbjct 13124 GTCTTCCCGGTCAGCGTCTTCACGAAGATCTGCAT 13090 Score = 86.0 bits (94), Expect = 7e-12 Identities = 150/218 (69%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||| | |||| || |||||| || || ||||| || || || || || | Sbjct 13076 CGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCC 13017 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || || || || || ||||||||||| | ||| | || ||||||| Sbjct 13016 TCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 12957 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA-- 43146 ||| ||| || || | || | | |||||| || || || || | || | Sbjct 12956 TCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCCGACGCCTCGACCTCAAGCGCAAGC 12897 Query 43147 -TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || || | || ||||||||||||||||| ||||| Sbjct 12896 GTCTTTCTGTCTGTGAGCGTCTTTACAAAGATCTGCAT 12859 >seq2043 Length=7375 Score = 82.4 bits (90), Expect = 9e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 60067 TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTAT 60126 |||| ||| |||||| |||||| |||| |||||||||||||||| ||||| |||||||| Sbjct 4997 TCCT-GGCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCGGGTATACTAACCACTAT 5055 Query 60127 ACTACCGAGGATTGA 60141 |||||| || | ||| Sbjct 5056 ACTACCAAGAACTGA 5070 >seq1135 Length=4548 Score = 82.4 bits (90), Expect = 9e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 60067 TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTAT 60126 |||| ||| |||||| |||||| |||| |||||||||||||||| ||||| |||||||| Sbjct 3861 TCCT-GGCCGGGAATTGAACCCGGGTCACCCGCGTGACAGGCGGGTATACTAACCACTAT 3803 Query 60127 ACTACCGAGGATTGA 60141 |||||| || | ||| Sbjct 3802 ACTACCAAGAACTGA 3788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571801474743680