Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq564 280 1e-70 seq1779 239 4e-58 >seq564 Length=19258 Score = 280 bits (310), Expect = 1e-70 Identities = 576/848 (68%), Gaps = 14/848 (2%) Strand=Plus/Minus Query 23021 GCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCG 23080 || ||||| ||||| ||||| || || |||||||| |||||||||||| ||||| || Sbjct 17468 GCAATCGACGCAAGGTTGCACACAGCAACCTCGTCCGGGGACGTGTACTCAACAATCTCT 17409 Query 23081 GTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCAC 23140 || || || ||| ||||| ||||||||||| || | |||||||| || ||||| Sbjct 17408 GTGCAGAGGTTGGAGCACTTAATCGTGCCCAAGTTCTTTTGGTTGCTCTTCTTGTTGCAA 17349 Query 23141 GAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGC 23200 | ||||||||| | |||||| || ||||| || || | ||| ||||| | |||||| | Sbjct 17348 GCATCCTTGTACAACATGTAGGGGGTGCCGGTTTCAATCTGAGACTCAAGGATCGCGAAC 17289 Query 23201 CACATAGTCTGAGCGTGAACACGTCGCACGTAC--CTGCCTTCTTCCTCGTACTTTTGGT 23258 |||| || || |||| ||| | ||| | ||| || |||||| |||| Sbjct 17288 CACAGTTCTTGGGCTTGAA-TGGTCTTA-ATACCGCGGCCCTCAGTCTCGTAGCGCTGGT 17231 Query 23259 ACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACA 23318 ||||||| || || || | || || || || || |||||||| | | || || Sbjct 17230 ACAACGCCTCGAACTCATCGCCATAGCAATCAGCGAGGCCGGGAGCGGAGTTGGGGTCCA 17171 Query 23319 TGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAG 23378 ||||| ||||| | || |||||||| || |||| || | || || ||||| || Sbjct 17170 TGAGAGTCCACTTCTCGTTCTTTTCAACACGCTTCATGAACAAGTCAGGGATCCAAAGCC 17111 Query 23379 CGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAA 23438 ||||||||| || || || ||| || || ||||| ||||| |||| | || | Sbjct 17110 CGTAGAACAAGTCTCGAGCACGCTGTTCATCCTTGCCAGTGTTGCGCTTCAGAAGTAAGA 17051 Query 23439 AGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTAT 23498 |||| || | ||| | ||||||||||| ||||| || || ||||| ||| | ||| Sbjct 17050 AGTCAAAAATGTCTCCGTGCCACGGCTCCAGGTACACTGCGAACGCACCCTTGCGCTTGC 16991 Query 23499 TGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGAC 23558 ||| |||||||| |||||||| || |||||||| |||| | || | || || || | Sbjct 16990 CGCCACCCTGATCCACGTAACGCGCGGTGTTGTTCCACACACGAAGAAGGGGAACAAGGC 16931 Query 23559 CGTTGGACGCGCCG--CCTACGCCCGCCACACTCGAACCTTTTGCT-CGAACGTTGTGAA 23615 ||||||||| |||| | ||| | | || || | ||| || | ||| | Sbjct 16930 CGTTGGACGTGCCGTTCGTACCACTGATGTACGCG---CCGGAGCTGCGGATACAGTGGA 16874 Query 23616 CGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCA--TTGTTTCAGAGTGTC 23673 ||| | || || || ||| | | || || || ||| ||| || || || || Sbjct 16873 TGTGCAGGCCGATACCACCGGCAGCCTTGCTGAT--GCGAGCAGCTTGCTTGAGGGTATC 16816 Query 23674 GTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGC 23733 ||||||||| |||||| |||||| || |||| || | ||| || || ||||| |||| Sbjct 16815 GTAGATGCCTTCGATGGAGTCCTCCTTCATCGCCACAAGGAAGCAAGACGACATCTGCGG 16756 Query 23734 TTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACAT 23793 || ||| || |||| ||| || || ||| |||||||||| || | || | || | Sbjct 16755 TTGGGGAGTGCCGGCATTGAAAAGGGTTGGGGTGGCGTGCGTGAACCAGCCCTGAGAAAG 16696 Query 23794 TAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCG 23853 || | |||||| || | | | || ||| | |||| ||||||| ||||| || Sbjct 16695 CAGTTCGTACGTCTCCTTCACACGTTGAAGGTCACCAACGTGGATACCGAGCGCGACACG 16636 Query 23854 CATCATCA 23861 || || || Sbjct 16635 CAGCAACA 16628 >seq1779 Length=53708 Score = 239 bits (264), Expect = 4e-58 Identities = 589/876 (67%), Gaps = 22/876 (3%) Strand=Plus/Plus Query 57561 TATCCAGACATTTGGAACATGTACAAAAAGGCAGA-AGCATCGTTTTGGACCGTCGAAGA 57619 ||||| ||||| ||||| | |||||| |||| || ||| ||||| ||||| | || || Sbjct 28409 TATCCGGACATCTGGAAGAAGTACAAGGAGGCCGAGAGC-TCGTTCTGGACGATGGAGGA 28467 Query 57620 AGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTT 57679 | |||||| | || ||| || ||||| | || || || ||| | | || Sbjct 28468 GATCGACCTGGGCAGCGACATGAAGGACTGGGACGCGCTGAACGACGACGAGCGCCACTT 28527 Query 57680 TATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGT 57739 || || ||| | | ||||| |||||||| ||| || || || ||||| | | Sbjct 28528 CATCAAGCACATCCTTGCGTTCTTCGCCGCCAGCGACGGCATCGTGCTTGAGAACCTCGC 28587 Query 57740 CGAAAGATTT-TCACAAGAAGTGCAAG-TGACGGAGGCGAGATGCTTTTACGGATTTCAA 57797 ||| | || | || || || |||| | | ||||| | ||||| ||||| || || Sbjct 28588 CGAGCGCTTCATGACC-GACGT-CAAGATCCCCGAGGCCCGCTGCTTCTACGGCTTCCAG 28645 Query 57798 GTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAG 57857 | || || || ||| | || |||| ||| | || ||||| || ||| | Sbjct 28646 ATCGCGATGGAGAACATCCACAGCGAAACGTACAGCATGCTGATCGAGACCTACATCCGC 28705 Query 57858 GACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAG 57917 |||| | |||||| | | ||||| | |||||||| || || ||| ||| | Sbjct 28706 GACACCACCGAGAAGCAGCGCCTGTTTGAGGCGATCGAGACGATTCCCTGCATCCAGCGG 28765 Query 57918 AAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTA 57977 ||||| |||||| | || ||||| || | || || | ||||||||| | || Sbjct 28766 AAGGCGGAGTGGGCCATGCGCTGGATCAAGT---CGACAACCTCCTTCGCCGAGCGCCTC 28822 Query 57978 ATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGCAATATTTTG 58036 | ||||||||||| || || || || |||||||| |||||||| ||| | || || || Sbjct 28823 GTTGCGTTCGCCGCGGTTGAGGGCATCTTCTTTTCCGGCAGCTTCTGC-TCCATCTTCTG 28881 Query 58037 GATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGA 58096 | ||||||| |||||||||||||| ||||| || || ||||||| |||| ||||| || Sbjct 28882 GCTGAAGAAGCGCGGCCTGATGCCTGGCCTCACCTTCTCCAACGAGCTGATCTCGCGTGA 28941 Query 58097 CGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTAC---TCTCACATTGTCAATAAACC 58153 |||||| ||||| || || || |||||| | ||||| || | || || || | Sbjct 28942 CGAGGGCCTCCACACCGACTTCGCGTGCATGCTGTACGAGAAGTACCTGGTGAACAAGCT 29001 Query 58154 GACGCG-GGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTG 58212 || ||| ||| |||||| || || || ||| || || |||||||| || ||||| Sbjct 29002 GA-GCGAGGAGCGCATCCGCGAGATCATTGGCGACGCCGTGGCGATCGAGAAGGAGTTCA 29060 Query 58213 TCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACA 58272 || ||| || || || ||| || |||| |||||| ||| ||||| | |||||| Sbjct 29061 TCTGCGACGCGCTCCCCGTGCGTCTGATCGGAATGAACTCCGATCTGATGGCCCAGTACA 29120 Query 58273 TTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGG---AGAGCGTCATTACAACA 58329 | ||||| ||||| ||| | || || || || | |||| ||| || | | Sbjct 29121 TCGAGTTCGTTGCGGACCGTCTGCTGATC--AC-GCTTGGCCACGAGACGATTTTCGGCG 29177 Query 58330 CGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCG 58389 | || || || || || || ||| | ||||||| || | |||||||| ||||| |||| Sbjct 29178 CCAAGAACCCCTTCGACTTCATGGAGATGATCTCCCTTCAAGGCAAGACGAACTTCTTCG 29237 Query 58390 aaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGA 58425 | || || || |||| || || || |||||||| Sbjct 29238 AGAAGAAGGTCGGCGAGTACCAGAAGGCCGGCGTGA 29273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445753829387520