Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1779 111 2e-19 seq564 86.0 9e-12 >seq1779 Length=53708 Score = 111 bits (122), Expect = 2e-19 Identities = 291/436 (67%), Gaps = 6/436 (1%) Strand=Plus/Minus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 ||| || || ||||| ||| ||| || |||||||| | || || |||||||| | Sbjct 28976 ACAGCATGCACGCGAAGTCGGTGTGGAGGCCCTCGTCACGCGAGATCAGCTCGTTGGAGA 28917 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC-CCA 50070 | ||||| || ||||| ||||| ||||| || ||||| || ||||| ||| | | || Sbjct 28916 AGGTGAGGCCAGGCATCAGGCCGCGCTTCTTCAGCCAGAAGATGGA-GCAGAAGCTGCCG 28858 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG-CGCT 50129 ||||||||||| || || || ||||| || ||||| || | ||| | | || | Sbjct 28857 GAAAAGAAGATGCCCTCAACCGCGGCGAACGCAACGAGGCGCTCGGCGAAGGAGGTTGTC 28798 Query 50130 GTCATGTATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 50188 | | || ||||| | || ||||| || |||||| | | || || ||||| || | Sbjct 28797 GACTTG-ATCCAGCGCATG-GCCCACTCCGCCTTCCGCTGGATGCAGGGAATCGTCTCGA 28740 Query 50189 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 50248 | || | ||| || | || || | | || | || || ||||||| | | Sbjct 28739 TCGCCTCAAACAGGCGCTGCTTCTCGGTGGTGTCGCGGATGTAGGTCTCGATCAGCATGC 28680 Query 50249 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 50308 | ||| |||| || ||||| || || || ||||| || |||||||| || | |||| Sbjct 28679 TGTACGTTTCGCTGTGGATGTTCTCCATCGCGATCTGGAAGCCGTAGAAGCAGCGGGCCT 28620 Query 50309 CGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCAC 50368 ||| |||| || || || || || || || | || ||| ||| || ||||| | Sbjct 28619 CGGGGATCTTGACGTCGGTCATGAAGCGCTCGGCGAGGTTCTCAAGCACGATGCCGTCGC 28560 Query 50369 TGGCTGCAAAAAACGC 50384 |||| || || ||||| Sbjct 28559 TGGCGGCGAAGAACGC 28544 >seq564 Length=19258 Score = 86.0 bits (94), Expect = 9e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 79669 ATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 79728 || || ||||||||||| |||||||| || || || || | ||| || ||||| ||| Sbjct 17414 ATCTCTGTGCAGAGGTTGGAGCACTTAATCGTGCCCAAGTTCTTTTGGTTGCTCTTCTTG 17355 Query 79729 TTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATC 79788 || || |||||||| || | ||| | || || || |||||||||||||| || | ||| Sbjct 17354 TTGCAAGCATCCTTGTACAACATGTAGGGGGTGCCGGTTTCAATCTGAGACTCAAGGATC 17295 Query 79789 GC 79790 || Sbjct 17294 GC 17293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718248544819840