Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1779 199 6e-46 seq564 154 2e-32 >seq1779 Length=53708 Score = 199 bits (220), Expect = 6e-46 Identities = 582/884 (66%), Gaps = 28/884 (3%) Strand=Plus/Plus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 || || ||||||| |||| ||||| ||| | | |||||| |||| || ||| || Sbjct 28394 CTCTTCCCCATCACCTATCCGGACATCTGGAAGAAGTACAAGGAGGCCGAGAGCTCGTTC 28453 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 |||||| | || ||| |||| ||| || ||| || | || ||||| | | ||| Sbjct 28454 TGGACGATGGAGGAGATCGACCTGGGCAGCGACATGAAGGACTGGGACGCGC---TGAAC 28510 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || ||||| | || || |||||| | || ||||| |||| | ||| || ||| Sbjct 28511 GACGACGAGCGCCACTTCATCAAGCACATCCTTGCGTTCTTCGCCGCCAGCGACGGCATC 28570 Query 125175 GTCAACGACAATCT-GTTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTG 125233 || || || || | || || ||| || | | || || |||| || Sbjct 28571 GTGCTTGAGAACCTCGCCGAG-CGCTTCATGACCGACGTCAAGATCCCCGAGGCCCGCTG 28629 Query 125234 CTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGAT 125293 ||| ||||| ||||| ||| ||| |||||| | ||| |||| |||| | ||||| Sbjct 28630 CTTCTACGGCTTCCAGATCGCGATGGAGAACATCCACAGCGAAACGTACAGCATGCTGAT 28689 Query 125294 TGACATGTACATTCGCGATCCGCAACGTAAA-CACATGCTCTTTAACGCAATCGACACGG 125352 || | ||||| ||||| | || || || || || ||| | || ||||| ||| Sbjct 28690 CGAGACCTACATCCGCGACAC-CACCGAGAAGCAGCGCCTGTTTGAGGCGATCGAGACGA 28748 Query 125353 TGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTT 125412 | || | || | ||||| | |||| || || |||||| | | |||||| | | Sbjct 28749 TTCCCTGCATCCAGCGGAAGGCGGAGTGGGCCATGCGCTGGATCAA-GTCGACAA--CCT 28805 Query 125413 CGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAG-T 125471 | | |||||| | || || || |||||||| || ||||||||||||||||| || || | Sbjct 28806 CCTTCGCCGAGCGCCTCGTTGCGTTCGCCGCGGTTGAGGGCATCTTCTTTTCCGGCAGCT 28865 Query 125472 TTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAAC 125531 | ||| ||||||| ||||| ||||||||||| || ||||| || || || | ||| Sbjct 28866 TCTGC-TCCATCTTCTGGCTGAAGAAGCGCGGCCTGATGCCTGGCCTCACCTTCTCCAAC 28924 Query 125532 GAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAAC 125591 ||| | || || || ||||||||||| ||| ||||| || | |||| || Sbjct 28925 GAGCTGATCTCGCGTGACGAGGGCCTCCACACCGACTTCGCGTGCATGCTGTACGAGAAG 28984 Query 125592 TATCTGCGTCCCGAGTGCAGATCC--AGCGATGAAAAGGTCATCAACATTGTAACCGATG 125649 || ||| ||| | | | ||||| || || | | || | ||| | Sbjct 28985 TACCTG--------GTGAACAAGCTGAGCGAGGAGCGCATCCGCGAGATCATTGGCGACG 29036 Query 125650 CCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGA 125709 ||||| ||| || | ||||| | ||| | || || || | |||| || |||| Sbjct 29037 CCGTGGCGATCGAGAAGGAGTTCATCTGCGACGCGCTCCCCGTGCGTCTGATCGGAATGA 29096 Query 125710 ACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGA 125769 ||| | | || ||| | ||||||| ||||| || || || ||||| ||| | | Sbjct 29097 ACTCCGATCTGATGGCCCAGTACATCGAGTTCGTTGCGGACCGTCTGCTGATC---ACGC 29153 Query 125770 TTGGCCGC---AAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCAC 125826 |||||| | | ||||| | ||||||||| ||||| || |||||| | || || | Sbjct 29154 TTGGCCACGAGACGATTTTCGGCGCCAAGAACCCCTTCGACTTCATGGAGATGATCTCCC 29213 Query 125827 TAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 | | || ||||| ||||| ||||||||||||||| |||||||| Sbjct 29214 TTCAAGGCAAGACGAACTTCTTCGAGAAGAAGGTCGGCGAGTAC 29257 >seq564 Length=19258 Score = 154 bits (170), Expect = 2e-32 Identities = 301/436 (69%), Gaps = 14/436 (3%) Strand=Plus/Plus Query 96906 GCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTT--TA-TCGAGATGCGCAAA 96962 || || ||| |||| || ||||||| ||| |||||||||| || | || |||||| Sbjct 17011 GCAGTGTACCTGGAGCCGTGGCACGGAGACATTTTTGACTTCTTACTTCTGAAGCGCAAC 17070 Query 96963 AACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGAT 97022 | ||||| || || || || | |||||||| || | || ||| | || || Sbjct 17071 A---CTGGCAAGGATGAACAGCGTGCTCGAGACTTGTTCTACGGGCTTTGGATCCCTGAC 17127 Query 97023 TTGTTCATGAAGCGCGT--CAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGT 97080 |||||||||||||| || || || | | | |||| || ||| |||| |||| Sbjct 17128 TTGTTCATGAAGCGTGTTGAAAAGAACGAG--AAGTGGACTCTCATGGACCCCAACTCCG 17185 Query 97081 CACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGC 97140 | ||||| || | ||||||| ||||| ||||| ||||| |||| | ||||||| Sbjct 17186 CTCCCGGCCTCGCTGATTGCTATGGCGATGAGTTCGAGGCGTTGTACCAGCGCTACGAGA 17245 Query 97141 AAGAGGGC--CGATACGTGAGACGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGAC 97198 |||||| || || | |||| | || | || | |||||||||| || ||| | Sbjct 17246 CTGAGGGCCGCGGTA-TTAAGACCATTC-AAGCCCAAGAACTGTGGTTCGCGATCCTTGA 17303 Query 97199 GGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAG 97258 | ||||| | || || || || || ||||| | ||||||||| | || || || Sbjct 17304 GTCTCAGATTGAAACCGGCACCCCCTACATGTTGTACAAGGATGCTTGCAACAAGAAGAG 17363 Query 97259 CAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTA 97318 ||||||| |||||||||| || ||| ||||||| || ||||| || ||||| ||||| Sbjct 17364 CAACCAAAAGAACTTGGGCACGATTAAGTGCTCCAACCTCTGCACAGAGATTGTTGAGTA 17423 Query 97319 CGCCTCTCCGGACGAG 97334 | | || ||||||||| Sbjct 17424 CACGTCCCCGGACGAG 17439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741038302130560