Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1779 104 3e-17 >seq1779 Length=53708 Score = 104 bits (114), Expect = 3e-17 Identities = 287/435 (66%), Gaps = 4/435 (1%) Strand=Plus/Minus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 ||| || || ||||| ||| ||| || |||||||| | || || |||||||| | Sbjct 28976 ACAGCATGCACGCGAAGTCGGTGTGGAGGCCCTCGTCACGCGAGATCAGCTCGTTGGAGA 28917 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415 | ||||| || ||||| ||||| ||||| || ||||| || ||||| ||| || | Sbjct 28916 AGGTGAGGCCAGGCATCAGGCCGCGCTTCTTCAGCCAGAAGATGGAGCAGAAGCTGCCGG 28857 Query 33416 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG-CGCTG 33474 |||||||||| || || || || || || |||| || | ||| | | || | | Sbjct 28856 AAAAGAAGATGCCCTCAACCGCGGCGAACGCAACGAGGCGCTCGGCGAAGGAGGTTGTCG 28797 Query 33475 TCATGTATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 33533 | || ||||| | || ||||| || |||||| | | || || ||||| || || Sbjct 28796 ACTTG-ATCCAGCGCATG-GCCCACTCCGCCTTCCGCTGGATGCAGGGAATCGTCTCGAT 28739 Query 33534 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACT 33593 || | ||| || | || || | | || | || || ||||||| | || Sbjct 28738 CGCCTCAAACAGGCGCTGCTTCTCGGTGGTGTCGCGGATGTAGGTCTCGATCAGCATGCT 28679 Query 33594 ATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 33653 ||| |||| || ||||| || || || ||||| || |||||||| || | ||||| Sbjct 28678 GTACGTTTCGCTGTGGATGTTCTCCATCGCGATCTGGAAGCCGTAGAAGCAGCGGGCCTC 28619 Query 33654 GGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACT 33713 || |||| || || || || || || || | || ||| ||| || ||||| || Sbjct 28618 GGGGATCTTGACGTCGGTCATGAAGCGCTCGGCGAGGTTCTCAAGCACGATGCCGTCGCT 28559 Query 33714 GGCTGCAAAAAACGC 33728 ||| || || ||||| Sbjct 28558 GGCGGCGAAGAACGC 28544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622929632888960