Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq564 235 1e-56 seq1815 105 2e-17 >seq564 Length=19258 Score = 235 bits (260), Expect = 1e-56 Identities = 593/891 (67%), Gaps = 24/891 (3%) Strand=Plus/Plus Query 363432 CAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCA 363491 |||| ||| ||||| || || || |||||| |||| ||||||| || | |||||||| Sbjct 16596 CAATCTTGAGATTGTGGAGCGGCCCCAGCATTTGTTGCTGCGTGTCGCGCTCGGTATCCA 16655 Query 363492 --TTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCT----TCTAAGTGCTCGTGT 363545 ||| || || | | || || || || | || ||| || ||| || Sbjct 16656 CGTTGGT--GACCTTCAACGTGTGAAGGAGACGTACGAACTGCTTTCTCAGGGCTGGT-- 16711 Query 363546 ATTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTC 363605 ||||||||||||| ||||| | | |||||| || |||| | || |||||||| || Sbjct 16712 --TCACGCACGCCACCCCAACCCTTTTCAATGCCGGCACTCCCCAACCGCAGATGTCGTC 16769 Query 363606 TTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAA 363665 |||||| ||| | |||||||| || |||||||| || |||| || || || ||| | Sbjct 16770 TTGCTTCCTTGTGGCGATGAAGGAGGACTCCATCGAAGGCATCTACGATACCCTCAAGCA 16829 Query 363666 TTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGT-G 363724 ||||| || |||| ||| || || || || | |||||| | | || | Sbjct 16830 AGCTGCTCGCATCAGCAAGGCTGCCGGTGGTATCGGCCTGCACATCCACTGTATCCGCAG 16889 Query 363725 CACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTC 363784 | | | || |||| | || || || || || || || |||||| | |||| Sbjct 16890 CTCCGGCGCGT-ACATCAGTGGTACGAACGGCACGTCCAACGGCCTTGTTCCCCTTCTTC 16948 Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGT 363844 |||||| |||| || ||| | ||||| || |||||||| || |||||||| || |||| Sbjct 16949 GTGTGTGGAACAACACCGCGCGTTACGTGGATCAGGGTGGCGGCAAGCGCAAGGGTGCGT 17008 Query 363845 TTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAA- 363903 | || |||| || ||||| || | || |||||||| || ||| || | ||| Sbjct 17009 TCGCAGTGTACCTGGAGCCGTGGCACGGAGACATTTTTGACTT-CTTA--CTTCTGAAGC 17065 Query 363904 --AACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTG 363961 ||||| || || || ||| |||||| || || ||||||| | |||||| | ||| Sbjct 17066 GCAACACTGGCAAGGATGAACAGCGTGCTCGAGACTTGTTCTACGGGCTTTGGATCCCTG 17125 Query 363962 ACCATTTTATGAAGCGCGTGGAGGCAGGTA--AGAATTGGTCACTCTTTTGCCCACACGA 364019 || || |||||||| || || | | | |||| ||| | ||| | ||| || Sbjct 17126 ACTTGTTCATGAAGCGTGTTGAA--AAGAACGAGAAGTGGACTCTCATGGACCCCAACTC 17183 Query 364020 ATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGA 364079 ||| || || | ||| | || || || | | || | ||| | || || Sbjct 17184 CGCTCCCGGCCTCGCTGATTGCTATGGCGATGAGTTCGAGGCGTTGTACCAGCGCTACGA 17243 Query 364080 ATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGA 364139 | ||||| | | |||||| |||| || || | || ||||| || ||| | || Sbjct 17244 GACTGAGGGCCGCGGTATTAAGACCATTCAAGCCCAAGAACTGTGGTTCGCGATCCTTGA 17303 Query 364140 TTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTC 364199 || |||||||| || || || ||||| ||||||||||| ||| | |||||| ||| Sbjct 17304 GTCTCAGATTGAAACCGGCACCCCCTACATGTTGTACAAGGATGCTTGCAACAAGAAGAG 17363 Query 364200 CAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATA 364259 |||||| || || | || || ||| || |||||| || || |||||| |||| || Sbjct 17364 CAACCAAAAGAACTTGGGCACGATTAAGTGCTCCAACCTCTGCACAGAGATTGTTGAGTA 17423 Query 364260 CACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCC 364310 ||| | || |||||| ||| || || |||||||||||||| || ||||| Sbjct 17424 CACGTCCCCGGACGAGGTTGCTGTGTGCAACCTTGCGTCGATTGCACTTCC 17474 >seq1815 Length=86323 Score = 105 bits (116), Expect = 2e-17 Identities = 392/596 (66%), Gaps = 30/596 (5%) Strand=Plus/Plus Query 111318 CCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTGGTTT 111377 || ||||||||||| || || | |||| || || ||||||||| ||||||| Sbjct 2140 CCCCTTCTCACAACGAAACGTGTGTTTTGGCGAGGTGTTTGCGAAGAACTCTTGTGGTTC 2199 Query 111378 ATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAA--TGTAAAAATTTGGGATG 111435 |||||||| ||| |||| | | ||| || | ||| || || || ||||| | Sbjct 2200 CTTCGCGGAGAAACAGATGC-ACGGCTGTTG-AGTGACAAAGGAGTGAAGATATGGGACG 2257 Query 111436 GAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCGACAACGAAGAAGGTGATC 111495 ||||| ||||| | ||||| ||| |||||| |||||||||| || ||| Sbjct 2258 ACAATGGGTCACGAGCATTTCTGGATAGCCGTGGTCTCACAGACAACGAAGTTGGCGATT 2317 Query 111496 TCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTAC-AAAACCATG-CA 111553 | ||||| ||||| || ||||||||| | ||||| || || || ||| || | || Sbjct 2318 TGGGACCTGTTTATGGCTTTCAATGGAGGCACTTCGGAGCTGAGTACGAAGGGCGTGATG 2377 Query 111554 CG-ACTCATATGATTCACAGGGAACTGATCAATTACAGAATGTCATTGATCAAAT-TAAG 111611 || ||| ||| || |||| |||||| | || | || |||| || | || | Sbjct 2378 CGAACTACAATG--GCA-AGGGTGTAGATCAAATCAAGCAGATCGTTGA--AACTCTACG 2432 Query 111612 -AACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATTGGAAAA 111670 || || |||||| ||| || || || | || ||||| || || | | || Sbjct 2433 CAAAAATCCAACTGATCGGCGAATCCTTCTCTCAGCTTGGAATCCCTGCGCGATCAACAA 2492 Query 111671 AATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATG-TACACGACGGGATGCTTT 111729 |||||||||||| || ||||| | ||| ||||||||||| | | || | || || | Sbjct 2493 AATGGCACTTCCTCCGTGTCACATCATGGCCCAGTTTTATGTTTCTCGTGGTGA-ACTGT 2551 Query 111730 CATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAA 111789 | ||| ||||| || | ||| |||||| ||| | |||||||| || || || ||| Sbjct 2552 CTTGCATGATGTACCAAAGGTCTTGTGATATGGGTTTGGGTGTTCCATTCAACATCGCAT 2611 Query 111790 GTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAA--ATCTCAA-----ACCGGGT 111842 ||| | || || || |||| || || | || |||| | || || Sbjct 2612 CCTACTCTCTTCTCAC------AATC-CTACTTGCAAAAGCATCTGGACTTCGTCCAGGA 2664 Query 111843 GAATTCATTCACGTTATCGGAGATGCGCATGTTTACACAAACCACATTGATGCACT 111898 |||||| | ||| | |||||||||| ||||| || ||| || |||||||||| Sbjct 2665 GAATTCGTACACACTCTCGGAGATGCACATGTGTATCGAAATCATGTTGATGCACT 2720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303315926564192