Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq781 118 1e-21 seq1779 113 4e-20 seq1639 89.7 5e-13 seq1631 87.8 2e-12 seq564 84.2 2e-11 >seq781 Length=13536 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||||| |||||||| | || | ||||||||||| || |||||||| || | | Sbjct 13316 CCACCGCGCAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC-CGC 13258 Query 131068 ATG-GTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | | ||||| ||||| |||||||| || || |||| | |||||||||||||| || Sbjct 13257 AAGCGTGCGGCCCTCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGG 13198 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| ||| ||| | | ||| | || || | | ||||| Sbjct 13197 GATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCCGACGCCTCGAC 13138 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | | || || || ||||| || || || ||||| ||||||||| Sbjct 13137 CTCAAGCGCAATCGTCTTCCCGGTCAGCGTCTTCACGAAGATCTGCATG 13089 Score = 98.7 bits (108), Expect = 9e-16 Identities = 163/232 (70%), Gaps = 5/232 (2%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||||| |||||||| | || | ||||||||||| || |||||||| || | Sbjct 13089 GCCGCCGCGCAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTC-CG 13031 Query 131067 CATG-GTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 || | ||||| ||||| |||||||| || || |||| | |||||||||||||| | Sbjct 13030 CAAGCGTGCGGCCCTCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCCGGCG 12971 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 |||| || || ||||| ||| ||| ||| | | ||| | || || | | ||||| Sbjct 12970 GGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCCGACGCCTCGA 12911 Query 131186 TGTCGACGGTAACGGTTTTAC---CGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | | || || || | | || || || ||||| || |||||||| Sbjct 12910 CCTCAAGCGCAAGCGTCTTTCTGTCTGTGAGCGTCTTTACAAAGATCTGCAT 12859 >seq1779 Length=53708 Score = 113 bits (124), Expect = 4e-20 Identities = 306/458 (67%), Gaps = 18/458 (4%) Strand=Plus/Plus Query 46147 TTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTT 46206 ||||||||||| | || || || || || |||||| |||| ||||| ||||| || Sbjct 28808 TTCGCCGAGCGCCTCGTTGCGTTCGCCGCGGTTGAGGGCATCTTCTTTTCCGGCAGCTTC 28867 Query 46207 GCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAG 46266 | ||||||| | | || | ||| | ||||| ||||| || || ||||||| Sbjct 28868 TGCTCCATCTTCTGGCTGAAGAAGCGCGGCCTGATGCCTGGCCTCACCTTCTCCAACGAG 28927 Query 46267 CTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTG---TCTCTACTATAACACT 46323 ||||| ||||| ||||||||||| || || ||||| ||||| || ||| | || Sbjct 28928 CTGATCTCGCGTGACGAGGGCCTCCACACCGACTTCGCGTGCATGCTGTACGAGAAGTAC 28987 Query 46324 CGCGTGCACGACAAGCT-TGC---GCCCGACACCGTGCTGAGCATGTTCAAGGAGGCGGT 46379 | ||| ||||||| || | || ||| | || ||| | || || || Sbjct 28988 CTGGTG---AACAAGCTGAGCGAGGAGCGCATCCGCG-AGATCATTGGC---GACGCCGT 29040 Query 46380 GGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGC-CCTGCTGGGCATGAACG 46438 ||| || ||||||||||| | | ||| || |||| ||| ||| | || |||||| Sbjct 29041 GGCGATCGAGAAGGAGTTCATCTGCGACGCGCTCCCCG-TGCGTCTGATCGGAATGAACT 29099 Query 46439 CACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACC 46498 | | ||| | | ||||||||||| || |||||||| ||||| | |||| || Sbjct 29100 CCGATCTGATGGCCCAGTACATCGAGTTCGTTGCGGACCGTCTGCTGATCACGCTTGGCC 29159 Query 46499 AGCCGAAGCATTTTC-ACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAG 46557 | || | |||||| ||| || || || || || ||| | | |||||||| | Sbjct 29160 ACGAGACG-ATTTTCGGCGCCAAGAACCCCTTCGACTTCATGGAGATGATCTCCCTTCAA 29218 Query 46558 GGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595 ||||| || || || ||||| ||| ||||||||||| Sbjct 29219 GGCAAGACGAACTTCTTCGAGAAGAAGGTCGGCGAGTA 29256 >seq1639 Length=27095 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | || ||||| | || | || |||||||| || |||||||| || | Sbjct 143 CCTCCGCGGAGGCGGAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 84 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| ||||||||||| ||| |||| | |||||||||||||| ||| Sbjct 83 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGG 24 Query 131128 ATTCCTTCTTTGTC 131141 || || || ||||| Sbjct 23 ATGCCCTCCTTGTC 10 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 131002 CATGAGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAA 131061 ||| | || || || | || ||||| | || | || |||||||| || |||||||| Sbjct 2966 CATTATCCTCCTCGGAGGCGGAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAG 2907 Query 131062 TCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCC 131121 || || ||||| ||||| ||||||||||| ||| |||| | |||||||||||| Sbjct 2906 TCAGCCAGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCC 2847 Query 131122 GGAGGGATTCCTTCTTTGTC 131141 || ||||| || || ||||| Sbjct 2846 GGGGGGATGCCCTCCTTGTC 2827 >seq1631 Length=42244 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| || ||||| | || | ||||||||||| || |||||||| || | | Sbjct 38325 CCTCCCCGCAGGCGGAGCACGAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTC-CGC 38267 Query 131068 ATG-GTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | | ||||| ||||| ||||||||||| || |||| | |||||||||||||| || Sbjct 38266 AAGCGTGCGGCCCTCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGCGG 38207 Query 131127 GATTCCTTCTTTGTC 131141 ||| || || ||||| Sbjct 38206 GATGCCCTCCTTGTC 38192 >seq564 Length=19258 Score = 84.2 bits (92), Expect = 2e-11 Identities = 734/1171 (63%), Gaps = 36/1171 (3%) Strand=Plus/Minus Query 145030 CTTGATCAAGTCGTCAATTAAGTACTGATTGACGACCTGAAACTCGCCGGCCAACACACG 145089 |||||| | ||| | | | ||||| |||| ||| | ||||| ||| | |||||| Sbjct 18066 CTTGATGAGGTCCACCACAAGGTACTTGTTGATGACAGGGAACTCACCGCTGAGCACACG 18007 Query 145090 ACGCAAATACACGTTAGACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGC 145149 || | || | ||| || ||||||||||| || ||||||| ||||| ||||| || | Sbjct 18006 GCGAAGGTAGATGTTCGAGGTGAAGGGTTCGAAGCACTCGTTGTTGCCGAGGATCTGGGA 17947 Query 145150 GGTCGTTGCGGTGGGCATGTACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGAT 145209 ||| | |||||||||||| || | | | || ||||| | ||| || | Sbjct 17946 GGTGGATGCGGTGGGCATTGGGGCGAGGAGAAGGGAGTTGCGGATACCGACACGCTGCAC 17887 Query 145210 GTCTTCCTTTAGCGTACCCCAATCCCATAG--CG-AAGTCGGC--CTCACGTCCCACATG 145264 ||||| || | |||| ||||| | || || ||| || || |||||||| Sbjct 17886 ACGCTCCTTGAGGGAGGCCCAGTCCCAGCGGCCGCTGGTTGGCTGCTTAC--CCCACATG 17829 Query 145265 TCGTACTGCAAAATGCCCTCGCTGGC-GGGGCTGCCTTGAAAGGAACTGTAACTGCC--C 145321 ||| |||| | |||||| | | || || | | | ||| | | || ||| | Sbjct 17828 TCGAACTGAAGAATGCCTTGGGACGCAGGAGATCCGGCGAACGTTTC-ATACGGGCCGTC 17770 Query 145322 CAAGTTTTGGCGAGCTCGCAACTCGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATT 145381 || | ||||| ||||| || | || || | || | || ||||||||| || Sbjct 17769 CA--CTGCGGCGATGTCGCAGCTGGATTCAAGGCCCGCGTAGTAGATTGTCTCGAAGATC 17712 Query 145382 TGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCA 145441 | | ||| | | | ||||| |||| || | || | ||||| || | || || Sbjct 17711 TCCTCGTTCAACTTCTGAGCTTCGGGGCTCGCGAAGGGAAGGCGCATGAGGATGAACGCG 17652 Query 145442 TCGGCGAGCCCCTGTATTCCCACGCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCC 145501 || || | ||||| | ||| | ||| | || ||||| | |||||| | ||| Sbjct 17651 TCCGCCAAGCCCTGAACTCCAAGGCCAACAGGGCGATGGCGGAAGTTGCTGCGGCGGGCC 17592 Query 145502 GACTCGATAGGATATCGATTACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTT 145561 |||| || || || || || || | ||| |||||||| |||||| |||| Sbjct 17591 TCTTCGACGGGGTAGAAGTTGCGATCAATCACTTTGTTCAAGTTCACCACTACCGTCTTT 17532 Query 145562 GTAATGTGCCGCAACTTTTCAAAGTCAAACCGAGCCTCGTCAACGACCACACAGCTATTG 145621 || | | ||| | | || ||| | |||| | ||| | | | Sbjct 17531 GTGACTTCGTACAAACGCTGATGATCGAACTTTCCTGTCTCAAGGTTCACGTACCGAGGA 17472 Query 145622 ACGGCGATCGACGCCAAATTACAAACTGCCGTCTCCT-CGGCGTCGCTGTATTGTACGAT 145680 | || |||||||| | || || || || ||| | ||| | || |||| | || || Sbjct 17471 AGTGCAATCGACGCAAGGTTGCACACAGCAACCTCGTCCGGGGACG-TGTACTCAACAAT 17413 Query 145681 CTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTT 145740 ||| | ||| | ||| || || || || |||| || | || || || ||| |||| Sbjct 17412 CTCTGTGCAGAGGTTGGAGCACTTAATCGTGCCCAAGTTCTTTTGGTTGCTCTTCTTGTT 17353 Query 145741 GCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGAT--A 145798 ||| || |||||||| | |||||| || ||| || || | ||| | ||| | ||| Sbjct 17352 GCAAGCATCCTTGTACAACATGTAGGGGGTGCCGGTTTCAATCTGAGACTCAAGGATCGC 17293 Query 145799 AAACGGTGCAAGTCCTGCGCACGCACCTGCTGCTGGTA--GCGGCCCTCTTCTTCGTATT 145856 ||| || || || || | | || | | || ||||||||| ||||| Sbjct 17292 GAAC--CACAGTTCTTGGGCTTGAA--TGGTCTTAATACCGCGGCCCTCAGTCTCGTAGC 17237 Query 145857 TCCTGTAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGG 145916 | ||| | | |||| ||| | || |||||||| | ||||||||| ||||| Sbjct 17236 GCTGGTACAACGCCTCGAACTCATCGCCATAGCAATCAGCGAGGCCGGGAGCGGAGTTGG 17177 Query 145917 GACACATCAGCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCC 145976 | ||| || | ||| |||| | || |||| ||| ||||| || || | || Sbjct 17176 GGTCCATGAGAGTCCACTTCTCGTTCTTTTCAACACGCTTCATGAACAAGTCAGGGATCC 17117 Query 145977 ACAGCGCGTACATCAAGTC----GCGCGCTTTGCAATCCTCAGCACCCATGTTTCGCTTC 146032 | ||| |||| | |||||| || |||| | | ||||| || |||| |||||| Sbjct 17116 AAAGCCCGTAGAACAAGTCTCGAGCACGCTGTTC-ATCCT---TGCCAGTGTTGCGCTTC 17061 Query 146033 A-AATTAAGCACACTATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCC 146091 | || |||| | | | | ||||| |||||||||| || | || || |||| || || Sbjct 17060 AGAAGTAAGAAGTC-AAAAATGTCTCCGTGCCACGGCTCCAGGTACACTGCGAACGCACC 17002 Query 146092 TTTTCGTTT---GCCACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCAT 146148 || || || ||||||||| ||||||| ||| | ||||||| | || || | | Sbjct 17001 CTTGCGCTTGCCGCCACCCTGATCCACGTAACGCGCGGTGTTGTTCCACACACGAAGAAG 16942 Query 146149 GGGCTCGACGCCGCTGGCTACGCCGTTCGTA 146179 ||| | | |||| ||| |||||||||| Sbjct 16941 GGGAACAAGGCCGTTGGACGTGCCGTTCGTA 16911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471999489239040