Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1779 131 3e-25 seq493 127 4e-24 >seq1779 Length=53708 Score = 131 bits (144), Expect = 3e-25 Identities = 528/820 (64%), Gaps = 20/820 (2%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| | || ||||| | ||||||||||||||||||||| || Sbjct 29238 TCGAAGAAGTTCGTCTTGCCTTGAAGGGAGATCATCTCCATGAAGTCGAAGGGGTTCTTG 29179 Query 251623 GCATTGTACTGCTTGGGATGGCCAA--GTGCTACGAAGATGCGGTCTGCCACAAACTCCA 251680 || | | | | ||||||| ||| | | ||| ||||| || || ||||| | Sbjct 29178 GCGCCGAAAATCGTCTCGTGGCCAAGCGTGATCAGCAGA--CGGTCCGCAACGAACTCGA 29121 Query 251681 GATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGA 251740 ||||| ||||||| || |||||||| || |||| ||| || | || || |||| Sbjct 29120 TGTACTGGGCCATCAGATCGGAGTTCATTCCGATCAGACGCACGGGGAGCGCGTCGCAGA 29061 Query 251741 TGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACA 251800 |||| ||||| ||| | || || || || | | || | | | || || Sbjct 29060 TGAACTCCTTCTCGATCGCCACGGCGTCGCCAATGATCTCGCGGATGCGCTCCTCGCTCA 29001 Query 251801 GCTTGTTCTCCAG---CTTTGAGTACAGGA-GCTCGCCAAACTGTTGGTGCAGACCCTCG 251856 |||||||| |||| ||| |||||| | || ||| || | | ||| || |||||| Sbjct 29000 GCTTGTTCACCAGGTACTTCTCGTACAGCATGCACGCGAAGTCGGT-GTGGAGGCCCTCG 28942 Query 251857 TCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGC 251916 || || ||| | ||||||||| | ||||||||||||| || || ||| | ||| Sbjct 28941 TCACGCGAGATCAGCTCGTTGGAGAAGGTGAGGCCAGGCATCAGGCCGCGCTTCTTCAGC 28882 Query 251917 CAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACA 251976 |||||||| | ||| ||| || || || | | ||||| || | | ||||| Sbjct 28881 CAGAAGATGGAGCAGAAGCTGCCGGAAAAGAAGATGCCCTCAACCGCGGCGAACGCAACG 28822 Query 251977 AGGCGCTCAGCAAACGA-CTTGTC--CTGCGACAAGAACTTCTGTGCCCATGCTGCCTTC 252033 |||||||| || || || ||||| || | || | | ||||| | |||||| Sbjct 28821 AGGCGCTCGGCGAAGGAGGTTGTCGACTTGATCCAGCGCAT---GGCCCACTCCGCCTTC 28765 Query 252034 TTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCC 252093 | ||| || || ||||| || ||||| || | | ||||| ||| Sbjct 28764 CGCTGGATGCAGGGAATCGTCTCGATCGCCTCAAACAGGCGCTGCTTCTCGGTGGTGTCG 28705 Query 252094 TCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATC 252153 |||| | || | ||| | |||| | || |||||| || | ||| Sbjct 28704 CGGATGTAGGTCTCGATCAGCATGCTGTACGTTTCGCTGTGGATGTTCTCCATCGCGATC 28645 Query 252154 TGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTGCA 252213 ||| | | ||||| || || ||| |||| || || ||| | || Sbjct 28644 TGGAAGCCGTAGAAGCAGCGGGCCTCGGGGATCTTGACGTCGGTCATGAAGCGCTCGGCG 28585 Query 252214 ATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGAAG 252273 | |||||| | ||| ||||| |||||| | || ||||| |||| ||| |||||||||| Sbjct 28584 AGGTTCTCAAGCACGATGCCGTCGCTGGCGGCGAAGAACGCAAGGATGTGCTTGATGAAG 28525 Query 252274 TGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTC-CTGATTCAGAGGAAC 252332 || ||||| |||||||| ||| ||| |||||| ||||| ||| ||| | Sbjct 28524 TGGCGCTCGTCGTCGTTCAGCGCGTC---CCAGTCCTTCATGTCGCTG-CCCAGGTCGAT 28469 Query 252333 TTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTAC 252372 || |||| ||||||||| | | | | |||| ||||||| Sbjct 28468 CTCCTCCATCGTCCAGAACGAGCTCTCGGCCTCCTTGTAC 28429 >seq493 Length=95943 Score = 127 bits (140), Expect = 4e-24 Identities = 213/308 (69%), Gaps = 0/308 (0%) Strand=Plus/Plus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCC 218577 |||||||| ||||||||||||||||| ||||| ||| ||||| || || || Sbjct 58892 GACTTCATAGACAAGGAGCTCATTCTGTTCTCCGTCGCTGACTGCGAGCGGTCCATCCCG 58951 Query 218578 AGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGG 218637 ||||| ||||| ||||||||||| |||||| ||| | ||||| | ||||||||| Sbjct 58952 AGCGTTGTGGACGGCCTCAAGCCTGGGCAGCGCAAGGTGCTCTTCTCGTGCTTCAAGCGG 59011 Query 218638 AACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGC 218697 |||||||| | || ||||| || ||| | ||||||| || ||||| |||| Sbjct 59012 AACCTGGTGAAGTCCATCAAGGTTGCGCAGCTGGCTGGTTACGTCTCCGAGCACTCTGCG 59071 Query 218698 TACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTG 218757 ||||| ||||| ||| | ||| || | || || | | | || ||||||| |||| Sbjct 59072 TACCACCACGGCGAGGCGTCGCTGGTGGCGACGATCGTGGCCCTTGCGCAGGACTTTGTG 59131 Query 218758 GGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGT 218817 ||| |||||| | | | |||| | | || ||||| ||| | || || ||| Sbjct 59132 GGCTCGAACAACCTCCCCATCCTGCAGCAGGATGGCCAGTTCGGTACCCGGCTGCAGGGC 59191 Query 218818 GGAAAGGA 218825 || ||||| Sbjct 59192 GGTAAGGA 59199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027807090377296