Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1779 248 2e-60 seq386 158 2e-33 seq781 134 3e-26 seq1639 100 5e-16 seq1826 89.7 9e-13 >seq1779 Length=53708 Score = 248 bits (274), Expect = 2e-60 Identities = 603/895 (67%), Gaps = 40/895 (4%) Strand=Plus/Minus Query 9939 ACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAGG 9998 ||||| |||||||||||||| ||| |||||||||||| | |||||| | ||| Sbjct 29271 ACGCCGGCCTTCTGGTACTCGCCGACCTTCTTCTCGAAGAAGTTCGTCTTGCCTTGAAGG 29212 Query 9999 GAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACCGAGT 10058 || || | |||||||||||| |||||||||| |||||| || | | || || || Sbjct 29211 GAGATCATCTCCATGAAGTCGAAGGGGTTCTTGGCGCCGAAAATCGTCTCGTGGCCAAGC 29152 Query 10059 GCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTTCATG 10118 | | | | ||||| || |||||||||||||||||| |||||| || |||||||| Sbjct 29151 GTGATCAGCAGACGGTCCGCAACGAACTCGATGTACTGGGCCATCAGATCGGAGTTCATT 29092 Query 10119 CCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGCTTCC 10178 || |||| || ||||| |||||||| ||||| ||||| ||| | || || || || Sbjct 29091 CCGATCAGACGCACGGGGAGCGCGTCGCAGATGAACTCCTTCTCGATCGCCACGGCGTCG 29032 Query 10179 TCGACGATGCTCTTTACCACG-TCAAGGGACAGCTTGTTCTCGAG---CTTCGAATACAG 10234 | | ||| ||| || || | |||||||||| | || |||| ||||| Sbjct 29031 CCAATGAT-CTCGCGGATGCGCTCCTCGCTCAGCTTGTTCACCAGGTACTTCTCGTACAG 28973 Query 10235 GA-GCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAAC 10293 | || | | || | | ||||||||||||||| || ||| | ||||||||| || Sbjct 28972 CATGCACGCGAAGTCGGT-GTGGAGGCCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGG 28914 Query 10294 CCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAGA 10353 || || ||||| || || || || ||||||||| |||| |||||| ||| || Sbjct 28913 TGAGGCCAGGCATCAGGCCGCGCTTCTTCAGCCAGAAGATGGAGCAGAAGCTGCCG--GA 28856 Query 10354 ACAGAAGA--CCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGA-GCGGTCG- 10409 | |||||| ||||| || | | || ||||||||||| |||||||| | |||| Sbjct 28855 AAAGAAGATGCCCTCAACCGCGGCGAACGCAACGAGGCGCTCGGCGAAGGAGGTTGTCGA 28796 Query 10410 CGCGA---AAAGTATTTCGAGGCCCACGCTGCCTTCTTTCCCACG--GCAGGG-ATCGTC 10463 | || | | || ||||||| | |||||| | | | |||||| |||||| Sbjct 28795 CTTGATCCAGCGCAT-----GGCCCACTCCGCCTTC---CGCTGGATGCAGGGAATCGTC 28744 Query 10464 TCGATAGCCTCGAA---GAGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGG 10520 ||||| ||||| || | ||| || |||||| ||| || | || | Sbjct 28743 TCGATCGCCTCAAACAGGCGCTGCTT---CTCGGTGGTGTCGCGGATGTAGGTCTCGATC 28687 Query 10521 AGCAGGGAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAACATA 10580 |||| | ||| |||||||||| | |||| | |||| | ||||||| Sbjct 28686 AGCATGCTGTACGTTTCGCTGTGGATGTTCTCCATCGCGATCTGGAAGCCGTAGAAGCAG 28627 Query 10581 CGTGCCGAGGGGTCCGTGACTTCCTCGGCA--AAGTTGTTGTTCAGGTTCTCCATCACCA 10638 || ||| |||| | |||| || | || ||| | | |||||||| | ||| | Sbjct 28626 CGGGCCTCGGGGATCTTGACGTC--GGTCATGAAGCGCTCGGCGAGGTTCTCAAGCACGA 28569 Query 10639 TGCCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGT 10698 |||| |||||| | || ||||| | |||||||||||||||||||||||||| || |||| Sbjct 28568 TGCCGTCGCTGGCGGCGAAGAACGCAAGGATGTGCTTGATGAAGTGGCGCTCGTCGTCGT 28509 Query 10699 TCAGTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGA 10758 |||| || |||||| || || | || | || |||||||| ||||||| Sbjct 28508 TCAGCGCGTC---CCAGTCCTTCATGTCGCTGCCCAGGTCGATCTCCTCCATCGTCCAGA 28452 Query 10759 AAGTGGCAACGGCCTTCTTGTACATCTGGAAAATGTCGGGGTACCGGATGGGGAA 10813 | | | |||||| ||||||| ||| | ||||| || || ||||||||| Sbjct 28451 ACGAGCTCTCGGCCTCCTTGTACTTCTTCCAGATGTCCGGATAGGTGATGGGGAA 28397 >seq386 Length=26907 Score = 158 bits (174), Expect = 2e-33 Identities = 251/360 (70%), Gaps = 0/360 (0%) Strand=Plus/Minus Query 268370 ATTTTTCGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCG 268429 || ||| | || |||||||| |||| || | || ||||| || || || || ||| Sbjct 13354 ATCTTTTGCGTGACGAACGTGGCGCCGCGACGGGGAGATTCGTGATTAAACAGAATACCG 13295 Query 268430 TTGCACGCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAACATC 268489 ||| ||||| || || || |||||||||||||| | ||||||| || ||| | Sbjct 13294 TTGGTAGCGAAGATACCGTAGGCCTCACGGTAGTTGATAGTAATCCAGTAAGCGTACAGC 13235 Query 268490 TTTGCAACTGCGTACGGAGAACGTGGATGGAAGGGCGTCGTGATCTTTTGAGGGATTTCT 268549 || || |||||||| || ||| || | |||||| ||||| | | ||||| || || Sbjct 13234 TTGGCGACTGCGTAGGGGCTACGGGGGTAGAAGGGGGTCGTCTCCGTCTGAGGAATCTCC 13175 Query 268550 CGGACTTTGCCAAAGAGCTCGGAGGTCGATGCTTGGTAGAACTTTGTTGTTTTTTCGAGA 268609 |||| ||||| | ||||| ||||| || |||||||||||||| || | |||| Sbjct 13174 TGGACCTTGCCGTACAGCTCCGAGGTGGAGGCTTGGTAGAACTTGCAGGTGTCAATGAGA 13115 Query 268610 CCGCAGATTCGGATTGCCTCGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTA 268669 ||| | |||||| || ||||||| || || || | | |||| | || || Sbjct 13114 CCGTTGGCTCGGATCGCGTCGAGCAGCTTTAGGGTGCCGACGGCATCTGTCTGAGCGGTG 13055 Query 268670 TACTCCGGCATCTCGAATGACACCTGGACATGGCTCTGGGCGCCCAGGTTATAAACCTCA 268729 ||||| ||||| ||||| ||||||| || || |||||| ||||||| |||| |||| Sbjct 13054 TACTCAGGCATGTCGAAGGACACCTTCACGTGCGACTGGGCAGCCAGGTTGTAAATCTCA 12995 >seq781 Length=13536 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||||| || | ||| ||||| ||||| || |||||||| || || | Sbjct 13316 CCACCGCGCAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCA 13257 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||||||||| || || || | || ||||| || || Sbjct 13256 AGCGTGCGGCCCTCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 13197 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| ||||| ||| |||||| ||||| | | || || Sbjct 13196 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCCGACGCCTCGACC 13137 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | | || || || || || || ||||| ||||| |||||||| Sbjct 13136 TCAAGCGCAATCGTCTTCCCGGTCAGCGTCTTCACGAAGATCTGCAT 13090 Score = 125 bits (138), Expect = 1e-23 Identities = 166/230 (72%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||||| || | ||| ||||| ||||| || |||||||| || || | Sbjct 13088 CCGCCGCGCAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCA 13029 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||||||||| || || || | || ||||| || || Sbjct 13028 AGCGTGCGGCCCTCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 12969 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| ||||| ||| |||||| ||||| | | || || Sbjct 12968 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCCGACGCCTCGACC 12909 Query 68415 TCCAAGGTGATGGTTTTTC---CCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | | | || |||| | ||||| ||||| || || |||||||| Sbjct 12908 TCAAGCGCAAGCGTCTTTCTGTCTGTGAGCGTCTTTACAAAGATCTGCAT 12859 >seq1639 Length=27095 Score = 100 bits (110), Expect = 5e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 |||||| || ||||| | || | ||| ||||||||||| || |||||||| || || | Sbjct 2961 TCCTCCTCGGAGGCGGAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGC 2902 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 || || | || || || | |||||| || ||||| || || | || ||||| || || Sbjct 2901 CAGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGGGG 2842 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTT 68383 ||||| |||||||| || ||||| ||||| Sbjct 2841 GATGCCCTCCTTGTCCTGGATCTTGGCCTT 2812 Score = 98.7 bits (108), Expect = 2e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 |||||||| ||||| | || | ||| ||||||||||| || |||||||| || || | Sbjct 143 CCTCCGCGGAGGCGGAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 84 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || || | || ||||| || || Sbjct 83 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGG 24 Query 68355 ATGCCTTCCTTGTCTTGAATCT 68376 ||||| |||||||| || |||| Sbjct 23 ATGCCCTCCTTGTCCTGGATCT 2 Score = 91.5 bits (100), Expect = 3e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 68262 AGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTC 68321 ||||||||||| || | ||||| || || | || || | || || |||| | || | Sbjct 1379 AGCGTGGACTCATTGTCAATGTTGTAGTCAGCCAGCGTGCGGCCCTCCTCTAGCAGCATG 1320 Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || ||||| || || | || || || || || |||| ||||||| || ||||| ||| Sbjct 1319 CCAGCGAACATCAGGCGCTGCTGCTCCGGGGGGATGCGCACCTTGTCCTGGATCTTGGCC 1260 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 ||||| |||||| ||||| | | || || |||| | ||| || || || |||||| Sbjct 1259 TTGACATTCTCGATCGTGTCAGAGGCCTCGACCTCCAGTGCGATCGTCTTGCCGGTGAGG 1200 Query 68442 GTCTTGAC 68449 ||||| || Sbjct 1199 GTCTTTAC 1192 >seq1826 Length=40188 Score = 89.7 bits (98), Expect = 9e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 68363 CTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGT 68422 |||||| || ||||| |||||||| |||||||||||| | | || || || | || Sbjct 31656 CTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCGGAGGCCTCCACCTCGAGGGC 31597 Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||| || |||||||||||||||||||| || ||||| Sbjct 31596 GATGGTCTTGCCCGTGAGGGTCTTGACGAAAATTTGCAT 31558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921596410248320