Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1779 349 7e-91 seq564 188 1e-42 >seq1779 Length=53708 Score = 349 bits (386), Expect = 7e-91 Identities = 591/852 (69%), Gaps = 7/852 (1%) Strand=Plus/Plus Query 42296 GGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGA 42355 |||||||||| | ||||||| |||| || ||| |||||| |||||||| || Sbjct 28414 GGACATCTGGAAGAAGTACAAGGAGGCCGAGAGCTCGTTCTGGACGATGGAGGAGATCGA 28473 Query 42356 CCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTCCTCAA 42415 ||||| || |||| | | |||||| | ||| || |||| ||| |||| Sbjct 28474 CCTGGGCAGCGACATGAAGGACTGGGACGCGCTGAACGACGACGAGCGCCACTTCATCAA 28533 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 |||| || || |||||||||||| |||||||| || ||||||||| ||| | Sbjct 28534 GCACATCCTTGCGTTCTTCGCCGCCAGCGACGGCATCGTGCTTGAGAACCTCGCCGAGCG 28593 Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 ||||||| || || || | ||||| ||||||||||||||||||||||| || || Sbjct 28594 CTTCATGACCGACGTCAAGATCCCCGAGGCCCGCTGCTTCTACGGCTTCCAGATCGCGAT 28653 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGT 42595 |||||| | ||| || |||| || ||| || | || ||||||| || || Sbjct 28654 GGAGAACATCCACAGCGAAACGTACAGCATGCTGATCGAGACCTACATCCGCGACACCAC 28713 Query 42596 CGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGA 42655 |||| | | ||||| |||| || |||||||| ||||||||| || ||||||||| Sbjct 28714 CGAGAAGCAGCGCCTGTTTGAGGCGATCGAGACGATTCCCTGCATCCAGCGGAAGGCGGA 28773 Query 42656 CTGGGCGCTCAACTGGATCGAGAGTCCCGACG-CAACGTTCGGCGAGAGGCTGGTAGCCT 42714 ||||| | ||||||| || |||| | | |||| |||| | || || || | Sbjct 28774 GTGGGCCATGCGCTGGATCAAGT----CGACAACCTCCTTCGCCGAGCGCCTCGTTGCGT 28829 Query 42715 TTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGC 42774 | |||| || |||||||||||||| || ||| |||| ||||||||||||||| ||| Sbjct 28830 TCGCCGCGGTTGAGGGCATCTTCTTTTCCGGCAGCTTCTGCTCCATCTTCTGGCTGAAGA 28889 Query 42775 AGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGC 42834 || | |||||| || ||||||||||| ||||| || ||| | |||||||| | Sbjct 28890 AGCGCGGCCTGATGCCTGGCCTCACCTTCTCCAACGAGCTGATCTCGCGTGACGAGGGCC 28949 Query 42835 TGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGG 42894 | || | ||||| || ||| | |||| | || |||| | |||||| ||| Sbjct 28950 TCCACACCGACTTCGCGTGCATGCTGTACGAGAAGTACCTGGTGAACAAGCTGAGCGAGG 29009 Query 42895 AGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGT 42954 |||| |||| | ||||| || ||||||| |||||||||||||||| || | Sbjct 29010 AGCGCATCCGCGAGATCATTGGCGACGCCGTGGCGATCGAGAAGGAGTTCATCTGCGACG 29069 Query 42955 CGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACG 43014 |||| |||||| ||| |||| |||||| ||| || ||| | |||||||| ||| || Sbjct 29070 CGCTCCCCGTGCGTCTGATCGGAATGAACTCCGATCTGATGGCCCAGTACATCGAGTTCG 29129 Query 43015 TCGCCGACCATCTCCTGTGCCAGATGGGTCTC-AGCCGCCTCTACAACACGCCGTGCCCC 43073 | || |||| ||| ||| | | | || | | || || | | | | | | |||| Sbjct 29130 TTGCGGACCGTCTGCTGATCACGCTTGGCCACGAGACG-ATTTTCGGCGCCAAGAACCCC 29188 Query 43074 TTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTC 43133 |||||||| ||||||| ||||| | | |||||||| ||||| ||||||||| ||| Sbjct 29189 TTCGACTTCATGGAGATGATCTCCCTTCAAGGCAAGACGAACTTCTTCGAGAAGAAGGTC 29248 Query 43134 GCCGACTACCAG 43145 | ||| |||||| Sbjct 29249 GGCGAGTACCAG 29260 >seq564 Length=19258 Score = 188 bits (208), Expect = 1e-42 Identities = 498/753 (66%), Gaps = 8/753 (1%) Strand=Plus/Minus Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGG 244747 || |||||||| || || ||||| |||| | ||||||| |||||||| ||||||||| Sbjct 17459 GCAAGGTTGCACACAGCAACCTCGTCCGGGGACGTGTACTCAACAATCTCTGTGCAGAGG 17400 Query 244748 TTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTG 244807 || |||||| || ||||||| || || || ||| ||| |||||| || |||||| Sbjct 17399 TTGGAGCACTTAATCGTGCCCAAGTTCTTTTGGTTGCTCTTCTTGTTGCAAGCATCCTTG 17340 Query 244808 TAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGA-CGCTGTTCCAGAGGTC 244866 || | |||| |||| ||||| || | ||| | | |||| ||| | ||| || || Sbjct 17339 TACAACATGTAGGGGGTGCCGGTTTCAATCTGAGACTCAAGGATCGC-GAACCACAGTTC 17281 Query 244867 CCTAGCCTTGACCG-TCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCT 244925 | | ||||| | || | | | |||||| | ||||||||| ||||| |||| Sbjct 17280 T-TGGGCTTGAATGGTCTTAATACCGCGGCCCTCAGTCTCGTAGCGCTGGTACAACGCCT 17222 Query 244926 CGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCC 244985 ||||||| ||| || || | |||||||| || ||| ||||||| ||| Sbjct 17221 CGAACTCATCGCCATAGCAATCAGCGAGGCCGGGAGCGGAGTTGGGGTCCATGAGAGTCC 17162 Query 244986 ACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGA 245045 ||| || | | || | || |||||| | ||| |||||||| || | | ||| | Sbjct 17161 ACTTCTCGTTCTTTTCAACACGCTTCATGAACAAGTCAGGGATCCAAAGCCCGTAGAACA 17102 Query 245046 GGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGA 245105 ||| | | | ||| || ||| ||||||||| | |||| || |||||||| | Sbjct 17101 AGTCTCGAGCACGCTGTTCATCCTTGCCAGTGTTGCGCTTCAGAAGTAAGAAGTCAAAAA 17042 Query 245106 CGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCT 245165 ||| ||||||| ||||||| ||| || |||| || || |||||| ||| |||| Sbjct 17041 TGTCTCCGTGCCACGGCTCCAGGTACACTGCGAACGCACCCTTGCGCTTGCCGCCACCCT 16982 Query 245166 GGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGT 245225 | ||||| | | || ||| | | || || || || | |||||| || Sbjct 16981 GATCCACGTAACGCGCGGTGTTGTTCCACACACGAAGAAGGGGAACAAGGCCGTTGGACG 16922 Query 245226 GGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTA 245285 |||||| || || ||||||| ||||| || | || | |||| || ||| | Sbjct 16921 TGCCGTTCGTACCACTGATGTACGCGCCGGAGCTGCGGATACAGTGGATGTGCAGGCCGA 16862 Query 245286 GTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCT--CTTGATGGTGTCTGCTATGCCCTC 245343 || ||||| |||| ||| | | |||||| ||||| ||| || ||||| || Sbjct 16861 TACCACCGGCAGCCTTGCTGAT--GCGAGCAGCTTGCTTGAGGGTATCGTAGATGCCTTC 16804 Query 245344 CATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCA 245403 ||| |||| |||||| | || ||||| || |||| ||| || | ||| ||| Sbjct 16803 GATGGAGTCCTCCTTCATCGCCACAAGGAAGCAAGACGACATCTGCGGTTGGGGAGTGCC 16744 Query 245404 CGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAA 245436 | ||||| || || ||| ||||||| || || Sbjct 16743 GGCATTGAAAAGGGTTGGGGTGGCGTGCGTGAA 16711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944312569634560