Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq1639 95.1 1e-14 seq781 95.1 1e-14 seq1631 89.7 4e-13 >seq1639 Length=27095 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 33899 AACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTG 33958 ||||||| | || || ||||| || || |||||| ||||||||| |||||||| || | Sbjct 145 AACCTCCGCGGAGGCGGAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAG 86 Query 33959 CCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 ||| || | || |||| ||||||||||| || |||||||||||||| ||| | Sbjct 85 CCAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGG 26 Query 34019 GCACGCTCTCTTTGTCC 34035 | | || ||| |||||| Sbjct 25 GGATGCCCTCCTTGTCC 9 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||| || || ||||| || || |||||| ||||||||| |||||||| || ||| Sbjct 2960 CCTCCTCGGAGGCGGAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 2901 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || |||| |||||||| || || |||||||||||||| ||| || Sbjct 2900 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGGGGG 2841 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 2840 ATGCCCTCCTTGTCC 2826 >seq781 Length=13536 Score = 95.1 bits (104), Expect = 1e-14 Identities = 104/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| |||||||| || || ||||| ||||||||| |||||||| || || Sbjct 13088 CCGCCGCGCAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGC- 13030 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || || | || |||| ||||| |||||||| |||||||||||||| ||| ||| Sbjct 13029 AAGCGTGCGGCCCTCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGG 12970 Query 34020 CACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 12969 GATGCCCTCCTTGTCC 12954 Score = 95.1 bits (104), Expect = 1e-14 Identities = 104/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| |||||||| || || ||||| ||||||||| |||||||| || || Sbjct 13316 CCACCGCGCAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGC- 13258 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || || | || |||| ||||| |||||||| |||||||||||||| ||| ||| Sbjct 13257 AAGCGTGCGGCCCTCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGG 13198 Query 34020 CACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 13197 GATGCCCTCCTTGTCC 13182 >seq1631 Length=42244 Score = 89.7 bits (98), Expect = 4e-13 Identities = 103/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | ||| || ||||| || || | ||| ||||||||| |||||||| || || Sbjct 38325 CCTCCCCGCAGGCGGAGCACGAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCCGC- 38267 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || || | || |||| |||||||| ||||| |||||||||||||| ||| ||| Sbjct 38266 AAGCGTGCGGCCCTCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGCGG 38207 Query 34020 CACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 38206 GATGCCCTCCTTGTCC 38191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397051482769312