Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq781 134 3e-26 seq493 96.9 8e-15 seq1779 93.3 1e-13 seq386 87.8 4e-12 >seq781 Length=13536 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | || ||||| || | ||| || || ||||| || ||||| || Sbjct 13316 CCACCGCGCAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCA 13257 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 |||||||| || || || | || || || || |||||||| ||||| || ||| Sbjct 13256 AGCGTGCGGCCCTCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 13197 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| ||||| |||||||| || || | || || || || Sbjct 13196 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCCGACGCCTCGACC 13137 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || |||| ||||||||||||||||| ||||| ||||| |||||||| Sbjct 13136 TCAAGCGCAATCGTCTTCCCGGTCAGCGTCTTCACGAAGATCTGCAT 13090 >seq493 Length=95943 Score = 96.9 bits (106), Expect = 8e-15 Identities = 213/317 (67%), Gaps = 2/317 (1%) Strand=Plus/Minus Query 325336 CGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTT 325395 |||||| |||||||| ||||||| | | |||||||||||| ||| || || | Sbjct 59206 CGCGTGGTCCTTACCGCCCTGCAGCCGGGTACCGAACTGGCCATCCTGCTGCAGGATGGG 59147 Query 325396 GATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGC 325455 || ||| || || ||| | ||||| |||||| |||||| ||| | ||| || || Sbjct 59146 GAGGTTGTTCGAGCCCACAAAGTCCTGCGCAAGGGCCACGATCGTCGCCACCAGCGACGC 59087 Query 325456 TTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTTCAC 325515 ||||| ||||| || || ||||| | |||||||| | ||| |||||||| | Sbjct 59086 CTCGCCGTGGTGGTACGCAGAGTGCTCGGAGACGTAACCAGCCAGCTGCGCAACCTTGAT 59027 Query 325516 GTCGGTCGTCAAATTGCGCTTGAAAGCTGAATATATCACTTTCCGTTGAGAAGGTTTGAA 325575 | || || || |||||||| || | | ||| || || || ||| |||| Sbjct 59026 GGACTTCACCAGGTTCCGCTTGAAGCACGAGAAGAGCACCTTGCGCTGCCCAGGCTTGAG 58967 Query 325576 ACCATCAACGACCGACGGAATGCTTCGTTC-CAGATCGTACCGCGAGAACAAAATAAGTT 325634 || || || || ||| ||| || || ||| | || ||||||| ||| || | Sbjct 58966 GCCGTCCACAACGCTCGGGATGGACCGCTCGCAGTCAGCGACG-GAGAACAGAATGAGCT 58908 Query 325635 CCTTGTCGATGAAGTCG 325651 ||||||| ||||||||| Sbjct 58907 CCTTGTCTATGAAGTCG 58891 >seq1779 Length=53708 Score = 93.3 bits (102), Expect = 1e-13 Identities = 154/217 (71%), Gaps = 8/217 (4%) Strand=Plus/Plus Query 269112 CGAAAAAGAGTTCATTTGTGACGCTATCCCATGTTC-TATGATCGGTATGAATGCCGATC 269170 ||| || |||||||| || ||||| |||| || | | ||||||| ||||| |||||| Sbjct 29047 CGAGAAGGAGTTCATCTGCGACGCGCTCCCC-GTGCGTCTGATCGGAATGAACTCCGATC 29105 Query 269171 TCATGAATCAATATATCGAATTCGTGGCTGATCGTAT-CT--TCACGGCACTCGGTTATG 269227 | ||| || || ||||| ||||| || || ||| | || ||||| || || | | Sbjct 29106 TGATGGCCCAGTACATCGAGTTCGTTGCGGACCGTCTGCTGATCACG---CTTGGCCACG 29162 Query 269228 AGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAA 269287 ||| | | | | ||||| ||||||| ||| ||||| | || || || |||| | Sbjct 29163 AGACGATTTTCGGCGCCAAGAACCCCTTCGACTTCATGGAGATGATCTCCCTTCAAGGCA 29222 Query 269288 AGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCA 269324 |||||||||||||||| ||| ||| |||| || || Sbjct 29223 AGACGAACTTCTTCGAGAAGAAGGTCGGCGAGTACCA 29259 >seq386 Length=26907 Score = 87.8 bits (96), Expect = 4e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 72416 CCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATAC 72475 |||||| || | || ||| |||| || || || || || |||||||||||||| | || Sbjct 13139 CCAAGCCTCCACCTCGGAGCTGTACGGCAAGGTCCAGGAGATTCCTCAGACGGAGACGAC 13198 Query 72476 TCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAA 72535 || || || || || ||||| |||| || || ||| |||||||||| ||||| || Sbjct 13199 CCCCTTCTACCCCCGTAGCCCCTACGCAGTCGCCAAGCTGTACGCTTACTGGATTACTAT 13258 Query 72536 AAATTACCGTGAG 72548 || ||||||||| Sbjct 13259 CAACTACCGTGAG 13271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179620302089568