Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq1779 150 4e-31 seq493 96.9 8e-15 seq386 87.8 4e-12 >seq1779 Length=53708 Score = 150 bits (166), Expect = 4e-31 Identities = 302/441 (68%), Gaps = 9/441 (2%) Strand=Plus/Plus Query 243286 TCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGT 243345 || || || ||||| ||||| || | | ||||| || || | |||||||| || Sbjct 28805 TCCTTCGCCGAGCGCCTCGTTGCGTTCGCCGCGGTTGAGGGCATCTTCTTTTCCGGCAGC 28864 Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 243405 |||||| ||||||| |||||| ||| || |||||||||||||| | || ||| Sbjct 28865 TTCTGCTCCATCTTCTGGCTGAAGAAGCGCGGCCTGATGCCTGGCCTCACCTTCTCCAAC 28924 Query 243406 GAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTA-TGTATTCAAA 243464 ||| | ||| || ||||||||||| ||| | |||| | || | |||| || Sbjct 28925 GAGCTGATCTCGCGTGACGAGGGCCTCCACACCGACTTCGC-GTGCATGCTGTACGAGAA 28983 Query 243465 GCTCCAG---AACAAGCT-ACCATTCGAAACGG-TCAAACAAATCATCACAGAAGCAGTT 243519 | || | |||||||| | | | | || || | ||||| || || || Sbjct 28984 GTACCTGGTGAACAAGCTGAGCGA--GGAGCGCATCCGCGAGATCATTGGCGACGCCGTG 29041 Query 243520 GAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCT 243579 | | ||| ||||| ||||| |||||||| | || || || || || |||||||| Sbjct 29042 GCGATCGAGAAGGAGTTCATCTGCGACGCGCTCCCCGTGCGTCTGATCGGAATGAACTCC 29101 Query 243580 GAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTAT 243639 || || |||| ||||||||||| ||||| || ||||| | | ||| ||||||| | Sbjct 29102 GATCTGATGGCCCAGTACATCGAGTTCGTTGCGGACCGTCTGCTGATCACGCTTGGCCAC 29161 Query 243640 GAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGG 243699 |||| | | | | ||||||||||||| | ||| |||||| | || || |||||||| Sbjct 29162 GAGACGATTTTCGGCGCCAAGAACCCCTTCGACTTCATGGAGATGATCTCCCTTCAAGGC 29221 Query 243700 AAAACTAACTTCTTCGAAAAG 243720 || || ||||||||||| ||| Sbjct 29222 AAGACGAACTTCTTCGAGAAG 29242 >seq493 Length=95943 Score = 96.9 bits (106), Expect = 8e-15 Identities = 213/317 (67%), Gaps = 2/317 (1%) Strand=Plus/Minus Query 297457 CGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTT 297516 |||||| |||||||| ||||||| | | |||||||||||| ||| || || | Sbjct 59206 CGCGTGGTCCTTACCGCCCTGCAGCCGGGTACCGAACTGGCCATCCTGCTGCAGGATGGG 59147 Query 297517 GATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGC 297576 || ||| || || ||| | ||||| |||||| |||||| ||| | ||| || || Sbjct 59146 GAGGTTGTTCGAGCCCACAAAGTCCTGCGCAAGGGCCACGATCGTCGCCACCAGCGACGC 59087 Query 297577 TTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTTCAC 297636 ||||| ||||| || || ||||| | |||||||| | ||| |||||||| | Sbjct 59086 CTCGCCGTGGTGGTACGCAGAGTGCTCGGAGACGTAACCAGCCAGCTGCGCAACCTTGAT 59027 Query 297637 GTCGGTCGTCAAATTGCGCTTGAAAGCTGAATATATCACTTTCCGTTGAGAAGGTTTGAA 297696 | || || || |||||||| || | | ||| || || || ||| |||| Sbjct 59026 GGACTTCACCAGGTTCCGCTTGAAGCACGAGAAGAGCACCTTGCGCTGCCCAGGCTTGAG 58967 Query 297697 ACCATCAACGACCGACGGAATGCTTCGTTC-CAGATCGTACCGCGAGAACAAAATAAGTT 297755 || || || || ||| ||| || || ||| | || ||||||| ||| || | Sbjct 58966 GCCGTCCACAACGCTCGGGATGGACCGCTCGCAGTCAGCGACG-GAGAACAGAATGAGCT 58908 Query 297756 CCTTGTCGATGAAGTCG 297772 ||||||| ||||||||| Sbjct 58907 CCTTGTCTATGAAGTCG 58891 >seq386 Length=26907 Score = 87.8 bits (96), Expect = 4e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 68405 CCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATAC 68464 |||||| || | || ||| |||| || || || || || |||||||||||||| | || Sbjct 13139 CCAAGCCTCCACCTCGGAGCTGTACGGCAAGGTCCAGGAGATTCCTCAGACGGAGACGAC 13198 Query 68465 TCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAA 68524 || || || || || ||||| |||| || || ||| |||||||||| ||||| || Sbjct 13199 CCCCTTCTACCCCCGTAGCCCCTACGCAGTCGCCAAGCTGTACGCTTACTGGATTACTAT 13258 Query 68525 AAATTACCGTGAG 68537 || ||||||||| Sbjct 13259 CAACTACCGTGAG 13271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102848121253600