Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq564 239 5e-58 seq1779 185 1e-41 >seq564 Length=19258 Score = 239 bits (264), Expect = 5e-58 Identities = 1114/1742 (64%), Gaps = 56/1742 (3%) Strand=Plus/Minus Query 113597 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGAC 113656 || ||||||||||| || ||||| || || |||||||| | || | |||||||| | Sbjct 18344 CGCAGGTAGTACATACCAGTCTTCAGTCCTTGCTTCCAAGTGTAAAAGTGCATCGATGTG 18285 Query 113657 AACTTGGAGAGTGTTGG---ACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATG 113713 | |||| | |||| ||| | | ||| | |||| ||| || |||||||| ||| Sbjct 18284 AG-TTGGCTTGACTTGGGGGACT--CGAGGAATAAATTCAAACTCTGAGATTGATCAATG 18228 Query 113714 AAGCGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTG----ATTTCCCACAC 113769 | ||||| || ||||| ||||| | ||||| ||| ||||||||||| Sbjct 18227 TACTTGCCACGGGATGCGGCCATGTCAATGAGGTCCTT----TTGGCGAATTTCCCACAC 18172 Query 113770 AGTTCTGTAGAGGT-TCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCAC 113828 | |||| || | ||| | || | ||||| || ||| ||| | |||||| Sbjct 18171 GATCTTGTACAGCTCTCTGAGCTCCAGC-GGGATTTCGTTGATCCCTTGAACGGAGCCGT 18113 Query 113829 CCGCCTTGACC-ATGAGATCCTTC---ATATCCTTTGACCAGAGACCAATCTTTTTGAGA 113884 ||| ||| |||| | || ||||||| | ||| || ||| ||| |||| Sbjct 18112 TCGC----ACCGATGATCTGGTTGCGAATATCCTCGGTCCACAGCCCACGCTTGATGAGG 18057 Query 113885 TCCTCCACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAG 113944 ||| |||| || | ||| |||| ||| |||||||| ||| || | || ||| Sbjct 18056 TCCACCACAAGGTACTTGTTGATGACAGGGAACTCACCGCTGAGCACACGGCGAAGGTAG 17997 Query 113945 ATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCT 114004 || || | ||| | || || |||||||| ||||| || | ||| |||| |||||| || Sbjct 17996 ATGTTCGAGGTGAAGGGTTCGAAGCACTCGTTGTTGCCGAGGATCTGGGAGGTGGATGCG 17937 Query 114005 GTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTG 114064 |||||||| || || | ||||||| ||| |||| ||| | | || |||||| Sbjct 17936 GTGGGCATTGGGGCGAGGAGAAGGGAGTTGCGGATACCGACACGCTGCACACGCTCCTTG 17877 Query 114065 AGGGCGTCCCAGTCGTAGTTGA-GCT--TTGTCTCCCCCTGCCACATATCAAACTGGAGG 114121 |||| | ||||||| || | ||| ||| || | |||||| || ||||| || Sbjct 17876 AGGGAGGCCCAGTCCCAGCGGCCGCTGGTTGGCTGCTTACCCCACATGTCGAACTGAAGA 17817 Query 114122 ATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAAT 114181 || |||||||| || || ||||| | || || || || ||||| || || | || | Sbjct 17816 ATGCCTTGGGACGCAGGAGATCCGGCGAACGTTTCATACGGGCCGTCCACTGCGGCGATG 17757 Query 114182 TCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCC 114241 ||| |||| | || ||| | |||| || |||||||| || || | |||| | Sbjct 17756 TCGCAGCTGGATTCAAGGCCCGCGTAGTAGATTGTCTCGAAGATCTCCTCGTTCAACTTC 17697 Query 114242 TTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGG 114301 | || ||| | | || | || || | || || | ||||| | || || Sbjct 17696 TGAGCTTCGGGGCTCGCGAAGGGAAGGCGCATGAGGATGAACGCGTCCGCCAAGCCCTGA 17637 Query 114302 ACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTC----TCCACGGG 114357 || || ||||||| |||||||| | | || | || |||| | || ||||| Sbjct 17636 ACTCCAAGGCCAACAGGGCGATGGCGGAAGTTGC---TGCG-GCGGGCCTCTTCGACGGG 17581 Query 114358 ATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATG 114417 || || || | ||| || || | || | || || |||||||| ||| | Sbjct 17580 GTAGAAGTTGCGATCAATCACTTTGTTCAAGTTCACCACTACCGTCTTTGTGACTTCGTA 17521 Query 114418 AAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGA 114477 | | | ||| || | | ||||| || || ||| |||||| || || || Sbjct 17520 CAAACGCTGATGATCGAACTTTCCTGTCTCAAGGTTCACGTACCGAGGAAGTGCAATCGA 17461 Query 114478 CGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAA 114537 ||| || || ||||||| ||| ||| |||||||| | ||| || || || | Sbjct 17460 CGCAAGGTTGCACACAGCAACCTCGTCCGGGGACGTGTACTCAACAATCTCTGTGCAGAG 17401 Query 114538 ATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTT 114597 || || | |||||| ||||||||||||||||| || ||| |||| || |||||||| Sbjct 17400 GTTGGAGCACTTAATCGTGCCCAAGTTCTTTTGGTTGCTCTTCTTGTTGCAAGCATCCTT 17341 Query 114598 GTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATC 114657 ||| | |||||| || || || || || | || |||| || || || ||| | || Sbjct 17340 GTACAACATGTAGGGGGTGCCGGTTTCAATCTGAGACTCAAGGATCGCGAACCACAGTTC 17281 Query 114658 GGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTA-CTTTGTGTAGAGGGCTT 114716 |||| | | || | | || ||||| |||||| | || ||| | || | Sbjct 17280 TTGGGCTTGAATGGTCTTAATACCGCGGCCCTCAGTCTCGTAGCGCTG-GTACAACGCCT 17222 Query 114717 CAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACC 114776 | ||||| || || | || | ||| || || || | ||| | ||||| || Sbjct 17221 CGAACTCATCGCCATAGCAATCAGCGAGGCCGGGAGCGGAGTTGGGGTCCATGAGAGTCC 17162 Query 114777 ATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGA 114836 | | | || ||||||||||||||||| | ||| |||||||| || | |||| | Sbjct 17161 ACTTCTCGTTCTTTTCAACACGCTTCATGAACAAGTCAGGGATCCAAAGCCCGTAGAACA 17102 Query 114837 GATCCCGACAGCGAGCTTCTTCATCC---CCCTGATTGAGACGCAACTCCAAAAAGTCCA 114893 || || ||| || | ||||||| || ||| | || || ||||| | Sbjct 17101 AGTCTCG--AGCACGC-TGTTCATCCTTGCCAGTGTTGCGCTTCAGAAGTAAGAAGTCAA 17045 Query 114894 TGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAG 114950 || || |||||||||| ||||||||||| |||| | ||||| || | ||| Sbjct 17044 AAATGTCTCCGTGCCACGGCTCCAGGTACACTGCGAACGCACCCTTGCGCTTGCCGCCAC 16985 Query 114951 CCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAG 115010 |||| | || || | ||| ||| || | || ||||| | |||| | || | | Sbjct 16984 CCTGATCCACGTAACGCGCGGTGTTGTTCCACACACGAAGAAGGGGAACAAGGCCGTTGG 16925 Query 115011 ATTGGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCT-CTGACATCATGGATGTGCA 115067 | ||| || || || | || |||| | | | ||| | || | |||||||||| Sbjct 16924 ACGTGCCGTTCGTACCACTGATGTACGCGCCGGA---GCTGCGGATACAGTGGATGTGCA 16868 Query 115068 TACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCA--CTCCGTGAGACTGCCGTAGAT 115125 || ||||| || || ||| || |||| ||| | | |||| | ||||||| Sbjct 16867 GGCCGATACCACCGGCAGCCTTGCTGA--TGCGAGCAGCTTGCTTGAGGGTATCGTAGAT 16810 Query 115126 CCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGG 115185 || ||||| ||||| |||| | || | ||||||||| |||||| || || || Sbjct 16809 GCCTTCGATGGAGTCCTCCTTCATCGCCACAAGGAAGCAAGACGACATCTGCGGTTGGGG 16750 Query 115186 TGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATC 115245 || || || ||||| |||||||| || ||||| ||||| || || || | | || Sbjct 16749 AGTGCCGGCATTGAAAAGGGTTGGGGTGGCGTGCGTGAACCAGCCCTGAGAAAGCAGTTC 16690 Query 115246 GTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAA 115305 ||| |||||| || ||| ||| | |||| ||||||| || ||| |||| || Sbjct 16689 GTACGTCTCCTTCACACGTTGAAGGTCACCAACGTGGATACCGAGCGCGACACGCAGCAA 16630 Query 115306 CA 115307 || Sbjct 16629 CA 16628 >seq1779 Length=53708 Score = 185 bits (204), Expect = 1e-41 Identities = 371/543 (68%), Gaps = 24/543 (4%) Strand=Plus/Minus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| || || ||| ||||||||||||||| ||||| || | | | ||| ||||||| Sbjct 29257 GTACTCGCCGACCTTCTTCTCGAAGAAGTTCGTCTTGCCTTGAAGGGAGATCATCTCCAT 29198 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGT----TGGCACCCCAATCTGTTTGAGGA 125873 || || || |||||||| | | |||| || |||| ||| | | || | Sbjct 29197 GAAGTCGAAGGGGTTCTTGGCGCCGAAAATCGTCTCGTGGC----CAAGCGTGATCAGCA 29142 Query 125874 GACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGT 125933 |||| |||| ||| |||| ||||||| | |||| || |||||||| ||||| || Sbjct 29141 GACGGTCCGCAACGAACTCGATGTACTGGGCCATCAGATCGGAGTTCATTCCGATCAGAC 29082 Query 125934 TACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGG 125993 ||||||||||| |||||||| ||||||| || ||||||| || | | ||| Sbjct 29081 GCACGGGGAGCGCGTCGCAGATGAACTCCTTCTCGATCGCCACGGCGTCGCCAATGATCT 29022 Query 125994 CGTGAATGGTGTCCACCC-CAGGTCTATTGCGCA---AAGTCTTGAAGAGT-TCCACGGC 126048 || | ||| ||| | | ||| | | || || | ||| | | || | |||| | Sbjct 29021 CGCGGATGCGCTCCTCGCTCAGCT-TGTTCACCAGGTACTTCTCGTACAGCATGCACG-C 28964 Query 126049 AAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGG 126108 || || |||||| ||||||||||| ||||| || || || |||||| || || || Sbjct 28963 GAAGTCGGTGTGGAGGCCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTGAGGCCAGG 28904 Query 126109 CATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCC 126168 ||| || || |||||||||| |||||| || | || || || || |||||||| || Sbjct 28903 CATCAGGCCGCGCTTCTTCAGCCAGAAGATGGAGCAGAAGCTGCCGGAAAAGAAGATGCC 28844 Query 126169 CTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAG---CGCGACTTTGTGTCAAA 126225 ||| || |||||||||| ||| ||||| || |||||| |||||| | Sbjct 28843 CTCAACCGCGGCGAACGCAACGAGGCGCTCGGCGAAGGAGGTTGTCGACTT------GAT 28790 Query 126226 CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAA 126285 ||| ||| ||||||| |||||| || ||| || || | |||| |||||| ||||| Sbjct 28789 CCAGCGCATGGCCCACTCCGCCTTCCGCTGGATGCAGGGAATCGTCTCGATCGCCTCAAA 28730 Query 126286 GAG 126288 || Sbjct 28729 CAG 28727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597336754628480