Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq781 95.1 1e-14 seq564 87.8 2e-12 seq1631 82.4 8e-11 >seq781 Length=13536 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||||| || || | |||||| || || || |||||||| || || Sbjct 13316 CCACCGCGCAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCA 13257 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || || |||||||| |||||| | || || ||||||||||| || || Sbjct 13256 AGCGTGCGGCCCTCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 13197 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| || ||| | || || || || || Sbjct 13196 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCCGACGCCTCGACC 13137 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | | | ||||| ||||||| || || ||||| || ||||| Sbjct 13136 TCAAGCGCAATCGTCTTCCCGGTCAGCGTCTTCACGAAGATCTGCAT 13090 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||||| | ||||| || || | |||||| || || || |||||||| || || Sbjct 13088 CCGCCGCGCAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCA 13029 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || || |||||||| |||||| | || || ||||||||||| || || Sbjct 13028 AGCGTGCGGCCCTCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 12969 Query 64337 ATTCCTTCTTTTTCTTGTATTTT 64359 || || || || || || || || Sbjct 12968 ATGCCCTCCTTGTCCTGGATCTT 12946 >seq564 Length=19258 Score = 87.8 bits (96), Expect = 2e-12 Identities = 358/559 (64%), Gaps = 9/559 (2%) Strand=Plus/Minus Query 154587 GACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCAC 154646 ||||| | |||||| || |||| || || | |||| | ||||| |||| ||| Sbjct 17462 GACGCAAGGTTGCACACAGCAACCTCGTCCGGGGACGTGTACTCAACAATCTCTGTGCAG 17403 Query 154647 AAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCT 154706 | || ||| ||| ||||||| ||| || || || || ||||||| || || Sbjct 17402 AGGTTGGAGCACTTAATCGTGCCCAAGTTCTTTTGGTTGCTCTTCTTGTTGCAAGCATCC 17343 Query 154707 TTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAATTGTGCGAAACAGA 154766 |||||||| ||||| |||||||| ||||| | || | |||| || | |||| || | Sbjct 17342 TTGTACAACATGTAGGGGGTGCCGGTTTCAATCTGAGACTCAAGGATCG--CGAACCACA 17285 Query 154767 CTTC--GCGCCTCAACTTGACA-AGTAAATCGATTTTCGCTCTCATATTGTTCGTACAGT 154823 ||| | || | || | | | | || || || |||| || | | ||||| Sbjct 17284 GTTCTTGGGCTTGAA-TGGTCTTAATACCGCGGCCCTCAGTCTCGTAGCGCTGGTACAAC 17226 Query 154824 TTTTCAAACTCTAAACTGTACACGTCCGACAAACCGGGACAGCGGTCGGGACACATCAAT 154883 || ||||| | || || | | |||||| | || ||| ||| | Sbjct 17225 GCCTCGAACTCATCGCCATAGCAATCAGCGAGGCCGGGAGCGGAGTTGGGGTCCATGAGA 17166 Query 154884 GACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACCCACAAAGCGTAC 154943 | |||| | ||||| | || || || ||||| ||||| || || | ||| | |||| Sbjct 17165 GTCCACTTCTCGTTCTTTTCAACACGCTTCATGAACAAGTCAGGGATCCAAAGCCCGTAG 17106 Query 154944 AACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCTTTAAATTCAAAAAATCA 155003 ||||| || || || | || || ||| |||| ||||| | | || || ||| Sbjct 17105 AACAAGTCTCGAGCACGCTGTTCATCCTTGCCAGTGTTGCGCTTCAGAAGTAAGAAGTCA 17046 Query 155004 TATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCCTTTGCGTTT---TCCT 155060 | ||||| ||||||||||||| | || || || | ||| || ||||| || || Sbjct 17045 AAAATGTCTCCGTGCCACGGCTCCAGGTACACTGCGAACGCACCCTTGCGCTTGCCGCCA 16986 Query 155061 CCTTGATCCACGTGACGCACACAATTATTGTACACGCGCAACAATGGTTCCACGCCGCTG 155120 || |||||||||| |||| | || || |||| || | | || | | |||| || Sbjct 16985 CCCTGATCCACGTAACGCGCGGTGTTGTTCCACACACGAAGAAGGGGAACAAGGCCGTTG 16926 Query 155121 GCCGTGCCGTTGGTGCCAC 155139 | ||||||||| || |||| Sbjct 16925 GACGTGCCGTTCGTACCAC 16907 >seq1631 Length=42244 Score = 82.4 bits (90), Expect = 8e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | |||||| || || || |||||||| || || | ||||| | || Sbjct 38310 AGCACGAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCC 38251 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || || ||||||||||| || || || || || || || Sbjct 38250 TCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCC 38191 Query 64352 TGTATTTT 64359 || || || Sbjct 38190 TGGATCTT 38183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499630710016640