Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq564 223 3e-53 >seq564 Length=19258 Score = 223 bits (246), Expect = 3e-53 Identities = 875/1353 (65%), Gaps = 41/1353 (3%) Strand=Plus/Plus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 |||||||| ||||| ||||| || || || || || |||||||| || || ||||| Sbjct 16720 GCCACCCCAACCCTTTTCAATGCCGGCACTCCCCAACCGCAGATGTCGTCTTGCTTCCTT 16779 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 || ||| |||| ||||||||| || || | ||| | ||||||| | ||| | Sbjct 16780 GTGGCGATGAAGGAGGACTCCATCGAAGGCATCTACGATACCCTCAAGCAAGCTGCTCGC 16839 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||| || || || || ||||| | ||||| | || | || | Sbjct 16840 ATCAGCAAGGCTGCCGGTGGTATCGGCCTGCACATCCACTGTATCCGCAGCTCCGGCGCG 16899 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 |||||| | ||||| || ||||| ||||||||||| || || | || || || | ||| Sbjct 16900 TACATCAGTGGTACGAACGGCACGTCCAACGGCCTTGTTCCCCTTCTTCGTGTGTGGAAC 16959 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 ||| | ||||| |||||||| |||||||| || | | | |||||| | ||||| || || Sbjct 16960 AACACCGCGCGTTACGTGGATCAGGGTGGCGGCAAGCGCAAGGGTGCGTTCGCAGTGTAC 17019 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAA-GAACCAC-GGCA 94249 || ||||| ||||||| ||| | | ||| | || | ||| | | ||| |||| Sbjct 17020 CTGGAGCCGTGGCACGGAGACATTTTTGACTTCTT--ACTTCTGAAGCGCAACACTGGCA 17077 Query 94250 ACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGA 94309 | ||| || | || ||||| | ||||||| || ||| | || ||| | || |||| Sbjct 17078 AGGATGAACAGCGTGCTCGAGACTTGTTCTACGGGCTTTGGATCCCTGACTTGTTCATGA 17137 Query 94310 AACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGT 94369 | || || || || ||| |||| ||| | ||||| |||||| || Sbjct 17138 AGCGTGTTGAAAAGAACGAGAAGTGGACTCTCATGGACCCCAACTCCGCTCCCGGCCTCG 17197 Query 94370 CCGACGTTTGTGG--ATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAA 94427 | || | ||| || | ||| || | ||||| || ||||| | ||||| Sbjct 17198 CTGATTGCTATGGCGAT-GAGTTC-GAGGCGTTGTACCAGCGCTACGAGACTGAGGGCCG 17255 Query 94428 GGCCAGGAAGGTTATGGATGCT-AGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGG 94486 | | ||| || | || | ||| |||||| |||| | || ||| | | Sbjct 17256 CGGTATTAAGACCATTCAAGCCCAAGAA-CTGTGGTTCGCGATCCTTGAGTCTCAGATTG 17314 Query 94487 AGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGC 94546 | || || || |||||||| |||| |||||| || |||| ||| |||||| || Sbjct 17315 AAACCGGCACCCCCTACATGTTGTACAAGGATGCTTGCAACAAGAAGAGCAACCAAAAGA 17374 Query 94547 ACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGG 94606 || | || ||| ||| |||| || || ||||| |||||||| ||||| || || |||| Sbjct 17375 ACTTGGGCACGATTAAGTGCTCCAACCTCTGCACAGAGATTGTTGAGTACACGTCCCCGG 17434 Query 94607 ACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTC---GTGCGAGATG 94663 ||||| |||||||||| ||||| | || || | ||||| | || || || Sbjct 17435 ACGAGGTTGCTGTGTGCAACCTTGCGTCGAT-------TGCACTTCCTCGGTACGTGAA- 17486 Query 94664 CCTACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGT--GAACTTCGCGGGAAGGAT 94721 ||| | || | |||||||| || | |||| ||| | || || | Sbjct 17487 CCTTGAG----ACAGGAAAGTTCGATCATCAGC-GTTTGTACGAAGTCACAAAGACGG-T 17540 Query 94722 GGTCTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAA 94781 || ||||| |||||| || || || ||||||||||||||| ||||| Sbjct 17541 AGTGGTGAACTTGAACAAAGTGATTGATCGCAACTTCTACCCCGTCGAAGAGGCCCGCCG 17600 Query 94782 CTCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGT 94841 | ||| | ||||| || | ||| | || || ||||| || ||||||||| | | Sbjct 17601 CAGCAACTTCCGCCATCGCCCTGTTGGCCTTGGAGTTCAGGGCTTGGCGGACGCGTTCAT 17660 Query 94842 GATGATGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGA 94901 | ||||| || |||| || ||| || | ||||| | | || ||||| Sbjct 17661 CCTCATGCGCCTTCCCTTCGCGAGCCCCGAAGCTCAGAAGTTGAACGAGGAGATCTTCGA 17720 Query 94902 AAGCATTTATTACG-GGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGC 94960 | || || |||| ||||| |||| | | | | | || | ||| | ||||||| | Sbjct 17721 GACAATCTACTACGCGGGCCTTGAATCCAGCTG-CGACATCGCCGCAGTGGACGGC---C 17776 Query 94961 CACACGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGG 95020 | | ||| ||||| |||||| || | || |||||| ||||||||||| | |||| Sbjct 17777 CGTATGAAACGTTCGCCGGATCTCCTGCGTCCCAAGGCATTCTTCAGTTCGACATGTGGG 17836 Query 95021 GTGTGAAGCCCTCG---GGTCTGTACGACTGGGAAGCTCT--ACGCGCTGATGTTATCAA 95075 || | |||| | || | | ||||||| | || | | || || | | Sbjct 17837 GTAAGCAGCCAACCAGCGGCCGCTGGGACTGGGCCTCCCTCAAGGAGCGTGTGC-AGCGT 17895 Query 95076 ACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGAT 95135 |||| | ||| | || || | ||||| |||||||| || ||||| | ||||| Sbjct 17896 GT-CGGTATCCGCAACTCCCTTCTCCTCGCCCCAATGCCCACCGCATCCACCTCCCAGAT 17954 Query 95136 CCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCT 95195 ||| ||||||||||||| ||||||||||||||||| ||| | ||| | || ||||| Sbjct 17955 CCTCGGCAACAACGAGTGCTTCGAACCCTTCACCTCGAACATCTACCTTCGCCGTGTGCT 18014 Query 95196 CGCCGGGGAATTCCCCGTCATCAACAAGCACCT 95228 | ||| || ||||| |||||||||||| |||| Sbjct 18015 CAGCGGTGAGTTCCCTGTCATCAACAAGTACCT 18047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494709248805760