Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq564 132 5e-26 seq781 82.4 8e-11 >seq564 Length=19258 Score = 132 bits (146), Expect = 5e-26 Identities = 371/562 (66%), Gaps = 13/562 (2%) Strand=Plus/Minus Query 153597 GCAATAGACGCCAGATTACAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATCTC 153655 ||||| ||||| || || || || || ||| || || | || |||||| || ||||| Sbjct 17468 GCAATCGACGCAAGGTTGCACACAGCAACCTCGTCCGGGGACG-TGTACTCAACAATCTC 17410 Query 153656 GGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCA 153715 | |||||||||| ||| || || |||||| || | || ||||| || ||||| Sbjct 17409 TGTGCAGAGGTTGGAGCACTTAATCGTGCCCAAGTTCTTTTGGTTGCTCTTCTTGTTGCA 17350 Query 153716 CGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATA---AA 153772 || || ||| | | |||||| || |||||| || | || | || | ||| || Sbjct 17349 AGCATCCTTGTACAACATGTAGGGGGTGCCGGTTTCAATCTGAGACTCAAGGATCGCGAA 17290 Query 153773 CCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTC 153832 || ||| || || ||| | | || | ||||||||| ||||||| |||| Sbjct 17289 CCA---CAGTTCTTGGGCTTGAATGGTCTTAATACCGCGGCCCTCAGTCTCGTAGCGCTG 17233 Query 153833 GTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGA-CACTGATGCGGAC 153891 ||||| ||| ||||| ||||| ||||| || |||||||||||| | | || || | Sbjct 17232 GTACAACGCCTCGAACTCATCGCCATAGCAATCAGCGAGGCCGGGAGCGGAGTTGGGGTC 17173 Query 153892 ACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGA 153951 ||| || | |||| | |||| | || || |||||||| || || | ||| | Sbjct 17172 -CATGAGAGTCCACTTCTCGTTCTTTTCAACACGCTTCATGAACAAGTCAGGGATCCAAA 17114 Query 153952 GCGCGTACATGAGGTCGCGCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATTGA 154011 || |||| | | ||| || || || ||| ||| ||||||| |||||| | Sbjct 17113 GCCCGTAGAACAAGTCTCGAGCACGCTGTTCATCCTTGCCAGTGTTGCGCTTCAGAAGTA 17054 Query 154012 GCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCT 154071 | | | | ||||| ||||||| || || | ||| || || | ||||| || |||| Sbjct 17053 AGAAGTCAAAAATGTCTCCGTGCCACGGCTCCAGGTACACTGCGAACGCACCCTTGCGCT 16994 Query 154072 TTCCG---CCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCA 154128 | ||| |||||||| |||| ||| | | ||||| | || || | | ||| | | Sbjct 16993 TGCCGCCACCCTGATCCACGTAACGCGCGGTGTTGTTCCACACACGAAGAAGGGGAACAA 16934 Query 154129 GGCCGCTTGCGGTGCCGTTGGT 154150 ||||| | | |||||||| || Sbjct 16933 GGCCGTTGGACGTGCCGTTCGT 16912 >seq781 Length=13536 Score = 82.4 bits (90), Expect = 8e-11 Identities = 159/234 (68%), Gaps = 3/234 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| |||| |||| || | || | | |||||||| || ||||||||||| Sbjct 13089 GCCGCCGCGCAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGC 13030 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || ||||| || || || |||| | |||| || ||||| |||||||| || Sbjct 13029 AAGCGTGCGGCCCTCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGG 12970 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | | || | ||||| | || ||| || Sbjct 12969 GATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCCGACGCCTCGAC 12910 Query 138567 CTCGACCGTCAGCGTTTTAC---CAGTCAGAGTTTTTACAAAAATCTGCATGGC 138617 ||| | || ||||| || | | || || || |||||||| |||||||| || Sbjct 12909 CTCAAGCGCAAGCGTCTTTCTGTCTGTGAGCGTCTTTACAAAGATCTGCATCGC 12856 Score = 82.4 bits (90), Expect = 8e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | || || ||||| || || || |||| | Sbjct 13283 GACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCCTCCAGCTGCTTCCCGGCA 13224 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| |||||||| || || || || ||||| ||| || || | Sbjct 13223 AAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACG 13164 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||| | || ||| ||||| | || | ||| || || ||||| || || Sbjct 13163 TTCTCGATCGTGTCCGACGCCTCGACCTCAAGCGCAATCGTCTTCCCGGTCAGCGTCTTC 13104 Query 138601 ACAAAAATCTGCATG 138615 || || ||||||||| Sbjct 13103 ACGAAGATCTGCATG 13089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496248405400320