Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1779 143 3e-29 seq781 114 1e-20 seq1639 84.2 2e-11 >seq1779 Length=53708 Score = 143 bits (158), Expect = 3e-29 Identities = 359/529 (68%), Gaps = 21/529 (4%) Strand=Plus/Plus Query 47059 TCGAGAGCATGCCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAGTACATTGAAAACG 47118 |||||| || |||||| | | | ||||| |||||||||||| | | | || || Sbjct 28740 TCGAGACGATTCCCTGCATCCAGCGGAAGGCGGAGTGGGCCATGCGCTGGA-TCAAGTCG 28798 Query 47119 AAAACGTCACTCTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCT 47178 | ||| || || | ||||| || | | || |||||| || |||||| ||||||| | Sbjct 28799 ACAACCTC-CT-TCGCCGAGCGCCTCGTTGCGTTCGCCGCGGTTGAGGGCATCTTCTTTT 28856 Query 47179 CGGGCAGCTT-TGCGGCGATATTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACG 47237 | |||||||| ||| | || || | |||| | || | ||||| |||||||| Sbjct 28857 CCGGCAGCTTCTGC-TCCATCTTCTGGCTGAAGAAGCGCGGCCTGATGCCTGGCCTCACC 28915 Query 47238 TTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTG---TCTC 47294 || ||||||||| |||||| | ||||| ||||| |||||| |||| || || || Sbjct 28916 TTCTCCAACGAGCTGATCTCGCGTGACGAGGGCCTCCACACCGACTTCGCGTGCATGCTG 28975 Query 47295 TACTACAA-CACTAGAGTCGATCAAAAGTTG---GACGTGCCCACCGTCAGCGACATGTT 47350 ||| | || || | || || | ||| || || | || || || |||| || | Sbjct 28976 TACGAGAAGTACCTG-GT-GA--ACAAGCTGAGCGAGGAGCGCA---TCCGCGAGATCAT 29028 Query 47351 TGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGT 47410 || ||| ||||| || || |||| |||||| || ||| || || |||| | | | Sbjct 29029 TGGCGACGCCGTGGCGATCGAGAAGGAGTTCATCTGCGACGCGCTCCCCGTGCGTCTGAT 29088 Query 47411 GGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGT 47470 ||||||||| | || ||||| |||||||||| || || || ||||| ||||| | Sbjct 29089 CGGAATGAACTCCGATCTGATGGCCCAGTACATCGAGTTCGTTGCGGACCGTCTGCT-GA 29147 Query 47471 TCA-GCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACA 47529 ||| ||| | | ||||| | | || |||| || ||||| || ||| | | | Sbjct 29148 TCACGCTTGGCCACGAGACGATTTTCGGCGCCAAGAACCCCTTCGACTTCATGGAGATGA 29207 Query 47530 TTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 | || || | |||||||| ||||| ||||||||| |||||||| || Sbjct 29208 TCTCCCTTCAAGGCAAGACGAACTTCTTCGAGAAGAAGGTCGGCGAGTA 29256 >seq781 Length=13536 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| ||| | || | ||| ||||| || || || ||||| || | Sbjct 13316 CCACCGCGCAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCA 13257 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || || |||||| |||||||| || || || Sbjct 13256 AGCGTGCGGCCCTCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 13197 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| ||| ||| | | |||| ||||||| |||||| Sbjct 13196 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCCGACGCCTCGACC 13137 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | | | ||| || |||||||| || || || || ||||||||| Sbjct 13136 TCAAGCGCAATCGTCTTCCCGGTCAGCGTCTTCACGAAGATCTGCATG 13089 Score = 100 bits (110), Expect = 3e-16 Identities = 167/241 (69%), Gaps = 3/241 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | |||| ||| | || | ||| ||||| || || || ||||| || | Sbjct 13088 CCGCCGCGCAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCA 13029 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || || |||||| |||||||| || || || Sbjct 13028 AGCGTGCGGCCCTCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 12969 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| ||| ||| | | |||| ||||||| |||||| Sbjct 12968 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCCGACGCCTCGACC 12909 Query 127067 TCGACGGTCACCG---TTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTATTTA 127123 || | | | || || || | || || || |||||||| |||||||| || | || | Sbjct 12908 TCAAGCGCAAGCGTCTTTCTGTCTGTGAGCGTCTTTACAAAGATCTGCATCGCGTTTTGA 12849 Query 127124 T 127124 | Sbjct 12848 T 12848 >seq1639 Length=27095 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975 ||| ||||| || || || ||||| || ||| |||||| || || ||||| || || Sbjct 2931 CGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGCGTGCGGCCCTCCTCCAGCTGCTTGCC 2872 Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTT 127029 |||| |||||| |||||||| || || || ||||||||||||||| ||| || Sbjct 2871 AGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTT 2818 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | || | ||| | || | ||| ||||| || || || ||||| || || Sbjct 143 CCTCCGCGGAGGCGGAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 84 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || ||| |||||| |||||||| || || || Sbjct 83 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGG 24 Query 127007 ATGCCCTCCTTGTCC 127021 ||||||||||||||| Sbjct 23 ATGCCCTCCTTGTCC 9 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475487390877440