Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq564 255 7e-63 seq1779 179 5e-40 >seq564 Length=19258 Score = 255 bits (282), Expect = 7e-63 Identities = 1116/1740 (64%), Gaps = 52/1740 (3%) Strand=Plus/Minus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 || ||||||||||| || ||||| || || |||||||| | || | ||||| || | Sbjct 18344 CGCAGGTAGTACATACCAGTCTTCAGTCCTTGCTTCCAAGTGTAAAAGTGCATCGATGTG 18285 Query 115618 AACTTGGAGAGTGTTGG---ACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATG 115674 | |||| | |||| ||| | | ||| | |||| ||| || |||||||| ||| Sbjct 18284 AG-TTGGCTTGACTTGGGGGACT--CGAGGAATAAATTCAAACTCTGAGATTGATCAATG 18228 Query 115675 AAGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTG----ATTTCCCACAC 115730 | || || || ||||| ||||| | ||||| ||| ||||||||||| Sbjct 18227 TACTTGCCACGGGATGCGGCCATGTCAATGAGGTCCTT----TTGGCGAATTTCCCACAC 18172 Query 115731 AGTTCTGTAGAGGT-TCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCAC 115789 | |||| || | ||| | || | ||||| || ||| ||| | ||||| Sbjct 18171 GATCTTGTACAGCTCTCTGAGCTCCAGC-GGGATTTCGTTGATCCCTTGAACGGAGCCGT 18113 Query 115790 CTGCCTTGACC-ATGAGATCCTTC---ATATCCTTTGACCAGAGACCAATCTTCTTGAGA 115845 || ||| |||| | || ||||||| | ||| || ||| ||| |||| Sbjct 18112 TCGC----ACCGATGATCTGGTTGCGAATATCCTCGGTCCACAGCCCACGCTTGATGAGG 18057 Query 115846 TCCTCCACGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAG 115905 ||| |||| |||| ||| |||| ||| |||||||| ||| || | || ||| Sbjct 18056 TCCACCACAAGGTACTTGTTGATGACAGGGAACTCACCGCTGAGCACACGGCGAAGGTAG 17997 Query 115906 ATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCT 115965 ||||| | ||| | || || |||||||| ||||| || | ||| |||| ||||| || Sbjct 17996 ATGTTCGAGGTGAAGGGTTCGAAGCACTCGTTGTTGCCGAGGATCTGGGAGGTGGATGCG 17937 Query 115966 GTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTG 116025 |||||||| || || | ||||||| |||||||| ||| || | | | || |||||| Sbjct 17936 GTGGGCATTGGGGCGAGGAGAAGGGAGTTGCGGATACCGACACGCTGCACACGCTCCTTG 17877 Query 116026 AGGGCGTCCCAGTCGTAGTTGA-GCT--TTGTCTCCCCCTCCCACATATCAAACTGGAGG 116082 |||| | ||||||| || | ||| ||| || | ||||||| || ||||| || Sbjct 17876 AGGGAGGCCCAGTCCCAGCGGCCGCTGGTTGGCTGCTTACCCCACATGTCGAACTGAAGA 17817 Query 116083 ATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAAT 116142 || ||||||||||| || ||||| | || || ||||| ||||| || || | || | Sbjct 17816 ATGCCTTGGGACGCAGGAGATCCGGCGAACGTTTCATACGGGCCGTCCACTGCGGCGATG 17757 Query 116143 TCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCC 116202 ||| |||| | || ||| | |||| || |||||||| || || | |||| | Sbjct 17756 TCGCAGCTGGATTCAAGGCCCGCGTAGTAGATTGTCTCGAAGATCTCCTCGTTCAACTTC 17697 Query 116203 TTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGG 116262 | || ||| | | || | || || | || || | ||||| | || || Sbjct 17696 TGAGCTTCGGGGCTCGCGAAGGGAAGGCGCATGAGGATGAACGCGTCCGCCAAGCCCTGA 17637 Query 116263 ACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTC----TCCACGGG 116318 || || ||||||| |||||||| | | || | || |||| | || ||||| Sbjct 17636 ACTCCAAGGCCAACAGGGCGATGGCGGAAGTT---GCTGCG-GCGGGCCTCTTCGACGGG 17581 Query 116319 ATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATG 116378 || || || | ||| || || | || | || || |||||||| ||| | Sbjct 17580 GTAGAAGTTGCGATCAATCACTTTGTTCAAGTTCACCACTACCGTCTTTGTGACTTCGTA 17521 Query 116379 AAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGA 116438 | | | ||| || | | ||||| || || ||| |||||| || || || Sbjct 17520 CAAACGCTGATGATCGAACTTTCCTGTCTCAAGGTTCACGTACCGAGGAAGTGCAATCGA 17461 Query 116439 CGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAA 116498 ||| || || ||||||| ||| ||| |||||||| | ||| || || || | Sbjct 17460 CGCAAGGTTGCACACAGCAACCTCGTCCGGGGACGTGTACTCAACAATCTCTGTGCAGAG 17401 Query 116499 ATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTT 116558 || || | |||||| ||||||||||||||||| || ||| |||| || |||||||| Sbjct 17400 GTTGGAGCACTTAATCGTGCCCAAGTTCTTTTGGTTGCTCTTCTTGTTGCAAGCATCCTT 17341 Query 116559 GTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACATC 116618 ||| | ||| || || || || || || | || |||| || || || ||| | || Sbjct 17340 GTACAACATGTAGGGGGTGCCGGTTTCAATCTGAGACTCAAGGATCGCGAACCACAGTTC 17281 Query 116619 GGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTA-CTTTGTGTAGAGGGCCT 116677 |||| | | || | | || ||||| |||||| | || ||| | |||| Sbjct 17280 TTGGGCTTGAATGGTCTTAATACCGCGGCCCTCAGTCTCGTAGCGCTG-GTACAACGCCT 17222 Query 116678 CAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGAC 116736 | ||||| || ||| ||| || | ||| || || || | || | ||||| | Sbjct 17221 CGAACTCATC-GCCATAGCAATCAGCGAGGCCGGGAGCGGAGTTGGGGTCCATGAGAGTC 17163 Query 116737 CATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAG 116796 || | | || ||||| ||||||||||| | ||| |||||||| ||| | |||| Sbjct 17162 CACTTCTCGTTCTTTTCAACACGCTTCATGAACAAGTCAGGGATCCAAAGCCCGTAGAAC 17103 Query 116797 AGATCCCGACAGCGAGCTTCTTCATCC---CCCTGATTGAGACGCAACTCCAAAAAGTCC 116853 | || || ||| || | ||||||| || ||| | || || ||||| Sbjct 17102 AAGTCTCG--AGCACGC-TGTTCATCCTTGCCAGTGTTGCGCTTCAGAAGTAAGAAGTCA 17046 Query 116854 ATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---ACGACCA 116910 | || || |||||||||| ||||||||||| |||| | |||||||| | ||| Sbjct 17045 AAAATGTCTCCGTGCCACGGCTCCAGGTACACTGCGAACGCACCCTTGCGCTTGCCGCCA 16986 Query 116911 GCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCA 116970 |||| | || || | ||| || ||| | || ||||| | |||| | || | Sbjct 16985 CCCTGATCCACGTAACGCGCGGTGTTGTTCCACACACGAAGAAGGGGAACAAGGCCGTTG 16926 Query 116971 GATTGGCCATTTGT-CCCCCGA-ATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCA 117028 || ||| || || || | || |||| | | | | | || | ||||||||||| Sbjct 16925 GACGTGCCGTTCGTACCACTGATGTACGCGCC--GGAGCTGCGGATACAGTGGATGTGCA 16868 Query 117029 TACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCC 117088 || ||||| || || ||| ||| | || | | |||| | ||||||| | Sbjct 16867 GGCCGATACCACCGGCAGCCTTGCTGATGCGAGCAGCTTGCTTGAGGGTATCGTAGATGC 16808 Query 117089 CATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTG 117148 | ||||| ||||| |||| | || | |||||||| |||||| || || || | Sbjct 16807 CTTCGATGGAGTCCTCCTTCATCGCCACAAGGAAGCAAGACGACATCTGCGGTTGGGGAG 16748 Query 117149 TACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGT 117208 | || || ||||| |||||||| || ||||| ||||| || || || | | |||| Sbjct 16747 TGCCGGCATTGAAAAGGGTTGGGGTGGCGTGCGTGAACCAGCCCTGAGAAAGCAGTTCGT 16688 Query 117209 AGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACA 117268 | |||||| ||| ||| ||| | |||| ||||||| | ||| |||| |||| Sbjct 16687 ACGTCTCCTTCACACGTTGAAGGTCACCAACGTGGATACCGAGCGCGACACGCAGCAACA 16628 >seq1779 Length=53708 Score = 179 bits (198), Expect = 5e-40 Identities = 367/539 (68%), Gaps = 16/539 (3%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || |||||| ||||||||||||||| ||||| || | ||| ||| ||||||| Sbjct 29257 GTACTCGCCGACCTTCTTCTCGAAGAAGTTCGTCTTGCCTTGAAGGGAGATCATCTCCAT 29198 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGT----TGGCACCCCAATCTGTTTGAGGA 127346 || || || |||||||| | | |||| || |||| ||| | | || | Sbjct 29197 GAAGTCGAAGGGGTTCTTGGCGCCGAAAATCGTCTCGTGGC----CAAGCGTGATCAGCA 29142 Query 127347 GACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGT 127406 |||| |||| ||| |||| ||||||| | |||| || |||||||| ||||| || Sbjct 29141 GACGGTCCGCAACGAACTCGATGTACTGGGCCATCAGATCGGAGTTCATTCCGATCAGAC 29082 Query 127407 TACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGG 127466 ||||||||||| |||||||| ||||||| || |||| || || | | ||| Sbjct 29081 GCACGGGGAGCGCGTCGCAGATGAACTCCTTCTCGATCGCCACGGCGTCGCCAATGATCT 29022 Query 127467 CGTGAATAGTGTCCACCC-CAGGTCTATTGC--GTAAAGTCTTGAAGAGT-TCCACAGCA 127522 || | || ||| | | ||| | | | | | ||| | | || | ||| || Sbjct 29021 CGCGGATGCGCTCCTCGCTCAGCTTGTTCACCAGGTACTTCTCGTACAGCATGCAC-GCG 28963 Query 127523 AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 127582 || || |||||| ||||||||||| ||||| || || || |||||| || || ||| Sbjct 28962 AAGTCGGTGTGGAGGCCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTGAGGCCAGGC 28903 Query 127583 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 127642 || || || |||||||||| |||||| || | || || ||| || |||||||| ||| Sbjct 28902 ATCAGGCCGCGCTTCTTCAGCCAGAAGATGGAGCAGAAGCTGCCGGAAAAGAAGATGCCC 28843 Query 127643 TCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCAC 127702 || || |||||||||| || |||||||| ||||| || | | | | ||| Sbjct 28842 TCAACCGCGGCGAACGCAACGAGGCGCTCGGCGAAGGA---GGTTGTCGACTTGATCCAG 28786 Query 127703 TTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAG 127761 ||| ||||||| ||||| || ||| || || | |||| |||||| ||||| || Sbjct 28785 CGCATGGCCCACTCCGCCTTCCGCTGGATGCAGGGAATCGTCTCGATCGCCTCAAACAG 28727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613489899096960