Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1779 159 6e-34 seq564 120 5e-22 >seq1779 Length=53708 Score = 159 bits (176), Expect = 6e-34 Identities = 369/544 (68%), Gaps = 13/544 (2%) Strand=Plus/Minus Query 159628 CTTCTTGTATTGCGAC-ACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTG 159686 ||||| ||| | || | || ||||||||||| ||||| |||||||| | | ||| || Sbjct 29263 CTTCTGGTACT-CGCCGACCTTCTTCTCGAAGAAGTTCGTCTTGCCTTGAAGGGAGATCA 29205 Query 159687 ATTCCATGAACCCGAATGGGTTCTTCACGTG--ATAGCGCTTCGGAAATCCGAGAGCCGC 159744 |||||||| |||| |||||||| || | | || ||| || || | Sbjct 29204 TCTCCATGAAGTCGAAGGGGTTCTTGGCGCCGAAAATCGTCTCGTGG--CCAAGCGTGAT 29147 Query 159745 CAGCAACCTGTCTGCCACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAG 159804 ||||| | ||| || || || |||||||| |||| | || |||| || || | Sbjct 29146 CAGCAGACGGTCCGCAACGAACTCGATGTACTGGGCCATCAGATCGGAGTTCATTCCGAT 29087 Query 159805 CAGCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCAC 159864 ||| | ||||||||||| || | | ||||||||||| ||| | || || ||| | Sbjct 29086 CAGACGCACGGGGAGCGCGTCGCAGATGAACTCCTTCTCGATCGCCACGGCGTCGCCAAT 29027 Query 159865 AATCT-GCGAGACACGTTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGC 159923 |||| ||| || || || | | | ||||| || | || | || |||| | || Sbjct 29026 GATCTCGCG-GATGCGCTCCTCGCTCAGCTTGTTCACCAGGTACTTCTCGTACAGCATGC 28968 Query 159924 ACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGC 159983 |||| |||||| ||| || |||||||| || ||||| | ||||||||| | | |||||| Sbjct 28967 ACGCGAAGTCGGTGTGGAGGCCCTCGTCACGCGAGATCAGCTCGTTGGAGAAGGTGAGGC 28908 Query 159984 CCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGC-ACCGCTAAAAAAG 160042 | ||||| | || ||| || ||||| || |||| ||| |||| ||| ||| ||| Sbjct 28907 CAGGCATCAGGCCGCGCTTCTTCAGCCAGAAGATGG-AGCAGAAGCTGCCGGAAAAGAAG 28849 Query 160043 ATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGG 160102 || ||||| || || || ||||| ||||| | ||| | || ||| |||| | | | | Sbjct 28848 ATGCCCTCAACCGCGGCGAACGCAACGAGGCGCTCGGCGAAGGAG--GTTGTCGAC-TTG 28792 Query 160103 GTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTA 160162 |||| | ||||||| || |||||| |||||| || || ||||| || | | Sbjct 28791 ATCCAGCGCATGGCCCACTCCGCCTTCCGCTGGATGCAGGGAATCGTCTCGATCGCCTCA 28732 Query 160163 AACA 160166 |||| Sbjct 28731 AACA 28728 >seq564 Length=19258 Score = 120 bits (132), Expect = 5e-22 Identities = 387/590 (66%), Gaps = 13/590 (2%) Strand=Plus/Minus Query 203833 CTTCGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTA 203892 |||| | |||| |||||||||| ||||||| |||||||| | | | | ||| ||||| Sbjct 18393 CTTCTTGATGTCAACCGTGAACTTGATGGCGTCGACGGCAGGGCGGGTGCGCAGGTAGTA 18334 Query 203893 CATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCAC 203952 ||| || ||||| || || | || ||| ||| | |||||| || | |||| ||| Sbjct 18333 CATACCAGTCTTCAGTCCTTGCTTCCAAGTGTAAAAGTGCATCGATGTGAGTTGGCTTGA 18274 Query 203953 GTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATC 204012 |||||| | | | | |||| | ||| ||| || ||| | | || Sbjct 18273 CTTGGGGGACTCGAGGAATAAATTCAAACTCTGAGATTGATCAATGTACTTGCCACGGGA 18214 Query 204013 TGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCT 204072 ||||||||| | || | | ||| || ||| |||||||| ||||| ||| ||||| Sbjct 18213 TGCGGCCATGTCAATGAGGTCCTTTTGGCGAATTTCCCACACGATCTTGTACAGCTCTCT 18154 Query 204073 GGTGTGTTGAGGCACATCTTCCCACGTCCTGATCG-AGCCGTTGTCGGCCATCAGTCTCA 204131 | | | || | || | | | ||| || ||||||| | | || | ||| Sbjct 18153 GAGCTCCAGCGGGATTTCGTTGATCC-CTTGAACGGAGCCGTTCGCACCGATGA-TCTGG 18096 Query 204132 TC-CTCGTCTCCTCCCCCCACATGCCCAACCT-GATCAGCTCCCGCACCAGGTGGGGGTT 204189 | | | ||||| ||||| ||||| || ||| || ||| ||| |||| ||| Sbjct 18095 TTGCGAATATCCTCGGTCCACA-GCCCACGCTTGATGAGGTCCACCACAAGGTACTTGTT 18037 Query 204190 GATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTC 204249 ||||| | || || ||| ||||| | || | | | ||| |||||| ||||| Sbjct 18036 GATGACAGGGAACTCACCGCTGAGCACACGGCGAAGGTAGATGTTCGAGGTGAAGGGTTC 17977 Query 204250 GAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAG 204309 ||| |||||||||||||| ||||| | |||| || |||||||| || || ||||| Sbjct 17976 GAAGCACTCGTTGTTGCCGAGGATCTGGGAGGTGGATGCGGTGGGCATTGGGGCGAGGAG 17917 Query 204310 CAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCAT 204369 ||||||||||| | |||| || || | ||| || |||| |||||| || Sbjct 17916 AAGGGAGTTGCGGATACCGACACGCTGCACACGCTCCTTGAGGGAGGCCCAGTC--CCAG 17859 Query 204370 CG--CACTG---GGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTG 204414 || | ||| || | | ||||||||||||||||||| |||||||| Sbjct 17858 CGGCCGCTGGTTGGCTGCTTACCCCACATGTCGAACTGAAGAATGCCTTG 17809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795132776623360