Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq781 123 6e-23 seq1639 111 4e-19 seq1631 87.8 4e-12 >seq781 Length=13536 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || ||||||||||| |||| ||||||||| || | || Sbjct 13310 CGCAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTG 13251 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| ||||| ||||| || |||||||||||||| || || Sbjct 13250 CGGCCCTCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCC 13191 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||||| |||| ||||| | | || || || | | Sbjct 13190 TCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCCGACGCCTCGACCTCAAGC 13131 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | |||||||| || || || || ||||| || || || Sbjct 13130 GCAATCGTCTTCCCGGTCAGCGTCTTCACGAAGATCTG 13093 Score = 113 bits (124), Expect = 1e-19 Identities = 158/221 (71%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || ||||||||||| |||| ||||||||| || | || Sbjct 13082 CGCAGGCGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTG 13023 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| ||||| ||||| || |||||||||||||| || || Sbjct 13022 CGGCCCTCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCC 12963 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||||||| |||| ||||| | | || || || | | Sbjct 12962 TCCTTGTCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCCGACGCCTCGACCTCAAGC 12903 Query 199589 GTGATCGTCTTAC---CCGTGAGAGTTTTCACAAAAATTTG 199626 | | |||||| | | ||||| || || ||||| || || Sbjct 12902 GCAAGCGTCTTTCTGTCTGTGAGCGTCTTTACAAAGATCTG 12862 >seq1639 Length=27095 Score = 111 bits (122), Expect = 4e-19 Identities = 85/101 (84%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || |||||||| || || |||||||| |||| |||||||||||||| || | || || Sbjct 128 AGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGCGTGCGGCCCTCC 69 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 ||||||||||| ||||||||||| || |||||||||||||| Sbjct 68 TCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGG 28 Score = 105 bits (116), Expect = 2e-17 Identities = 84/101 (83%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || |||||||| || || |||||||| |||| |||||||||||||| || | || || Sbjct 2945 AGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGCGTGCGGCCCTCC 2886 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 ||||||||||| || |||||||| || |||||||||||||| Sbjct 2885 TCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGG 2845 >seq1631 Length=42244 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| | ||||||||||| |||| ||||||||| || | || | || || Sbjct 38310 AGCACGAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCC 38251 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 ||||||||||| || || ||||| || |||||||||||||| Sbjct 38250 TCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGG 38210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178887523271152