Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq781 127 2e-24 seq1631 104 3e-17 seq1639 100 3e-16 >seq781 Length=13536 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||| || |||| || |||||| ||||| |||||||| | || ||||| | Sbjct 13304 CGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCC 13245 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || |||||||| ||||| || |||| |||||||||||| | ||| | || ||||||| Sbjct 13244 TCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 13185 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| ||||||| ||| | || | | |||||| || || || || | || || Sbjct 13184 TCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCCGACGCCTCGACCTCAAGCGCAATC 13125 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || |||||||| || || ||||| ||||| Sbjct 13124 GTCTTCCCGGTCAGCGTCTTCACGAAGATCTGCAT 13090 Score = 113 bits (124), Expect = 5e-20 Identities = 156/218 (72%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||| || |||| || |||||| ||||| |||||||| | || ||||| | Sbjct 13076 CGCAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCC 13017 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || |||||||| ||||| || |||| |||||||||||| | ||| | || ||||||| Sbjct 13016 TCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 12957 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGA-- 46556 ||| ||||||| ||| | || | | |||||| || || || || | || | Sbjct 12956 TCCTGGATCTTCGCCTTCACGTTCTCGATCGTGTCCGACGCCTCGACCTCAAGCGCAAGC 12897 Query 46557 -TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || || | || ||||| || |||||||| ||||| Sbjct 12896 GTCTTTCTGTCTGTGAGCGTCTTTACAAAGATCTGCAT 12859 >seq1631 Length=42244 Score = 104 bits (114), Expect = 3e-17 Identities = 99/127 (78%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||| || ||||| || |||||| ||||| |||||||| | || ||||| | || || Sbjct 38308 CACGAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCCGCAAGCGTGCGGCCCTCCTC 38249 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||| || || |||| |||||||||||| | ||| | || |||||||||| Sbjct 38248 CAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 38189 Query 46504 GATCTTC 46510 ||||||| Sbjct 38188 GATCTTC 38182 >seq1639 Length=27095 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||| || |||| || |||||| ||||| |||||||| | || ||||| | || || Sbjct 126 CACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGCGTGCGGCCCTCCTC 67 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||||||||||| |||| |||||||||||| | || | || |||||||||| Sbjct 66 CAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 7 Query 46504 GATCT 46508 ||||| Sbjct 6 GATCT 2 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||||| | || | ||| || |||| || |||||| ||||| |||||||| | Sbjct 2960 CCTCCTCGGAGGCGGAGCACAAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 2901 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || ||||||||||| ||||| |||| |||||||||||| | || Sbjct 2900 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGGGGG 2841 Query 46487 ACGCTCTCCTTGTCCATGATCTT 46509 | || |||||||||| |||||| Sbjct 2840 ATGCCCTCCTTGTCCTGGATCTT 2818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565222460277120