Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1779 399 2e-106 seq781 107 2e-18 seq1639 93.3 4e-14 seq1631 91.5 1e-13 >seq1779 Length=53708 Score = 399 bits (442), Expect = 2e-106 Identities = 651/925 (70%), Gaps = 18/925 (2%) Strand=Plus/Minus Query 132593 TCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCA 132652 ||||||| || || || ||||| ||||| ||||| || || || || || || | | Sbjct 29273 TCACGCCGGCCTTCTGGTACTCGCCGACCTTCTTCTCGAAGAAGTTCGTCTTGCCTTGAA 29214 Query 132653 AGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTA----GTGCTTGGTGCCG 132708 ||| || | | ||| || || |||||||| | | | | || || | ||| Sbjct 29213 GGGAGATCATCTCCATGAAGTCGAAGGGGTTCTTGGCGCCGAAAATCGT-CTCGTGGCCA 29155 Query 132709 ATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAA 132768 | | || || ||||| | ||| || |||||||||||||| || | ||| ||| | Sbjct 29154 AGC--GT-GATCAGCAGACGGTCCGCAACGAACTCGATGTACTGGGCCATCAGATCGGAG 29098 Query 132769 TTAAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCGAC 132827 || | ||| | ||||||||| || ||||| ||| || ||| | || |||||| || || Sbjct 29097 TTCATTCCGATCAGACGCACGGGGAGCGCGTCGCAGATGAACTCCTT-CTCGATCGCCAC 29039 Query 132828 CGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTT--- 132884 |||||| | ||| || | | |||| || ||||| || | ||||| | ||| Sbjct 29038 GGCGTCGCCAATGATCTCGCGGATGCGCTCCTCGCTCAGCTTGTTCACCAGGTACTTCTC 28979 Query 132885 GAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCT 132944 | ||| || ||| || |||||| || | ||||||||| | || || || |||||| Sbjct 28978 GTACAGCATGCACGCGAAGTCGGTGTGGAGGCCCTCGTCACGCGAGATCAGCTCGTTGGA 28919 Query 132945 GAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCC 133004 ||| || | ||| ||||| |||||||| || || ||||| || |||| | ||| ||||| Sbjct 28918 GAAGGTGAGGCCAGGCATCAGGCCGCGCTTCTTCAGCCAGAAGATGGAGCAGAAGCTGCC 28859 Query 133005 CGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTC 133064 |||||||||| |||||| || || ||||| || || ||||||||| |||| | || || Sbjct 28858 GGAAAAGAAGATGCCCTCAACCGCGGCGAACGCAACGAGGCGCTCGGCGAAGGAGG-TTG 28800 Query 133065 TTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTC 133124 | || | |||||||||| ||||| || ||||| | || ||| || ||||| || Sbjct 28799 TCGACTTG--ATCCAGCGCATGGCCCACTCCGCCTTCCGCTGGATGCAGGGAATCGTCTC 28742 Query 133125 GATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGT 133184 ||| || | |||| || | ||||| | | || | |||||| ||||| || | Sbjct 28741 GATCGCCTCAAACAGGCGCTGCTTCTCGGTGGTGTCGCGGATGTAGGTCTCGATCAGCAT 28682 Query 133185 CGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGC 133244 ||| |||| ||| | ||||||||| ||||| || |||||||| ||||| || || Sbjct 28681 GCTGTACGTTTCGCTGTGGATGTTCTCCATCGCGATCTGGAAGCCGTAGAAGCAGCGGGC 28622 Query 133245 CTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTC 133304 |||| | || || || ||| |||||| | || || || ||||||||||| Sbjct 28621 CTCGGGGATCTTGACGTCGGTCATGAAGCGCTCGGCGAGGTTCTCAAGCACGATGCCGTC 28562 Query 133305 GCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG 133364 |||||||||||| || || || | |||||||||||| |||||||||| ||||||| |||| Sbjct 28561 GCTGGCGGCGAAGAACGCAAGGATGTGCTTGATGAAGTGGCGCTCGTCGTCGTTC-AGCG 28503 Query 133365 C-TCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCT 133423 | |||||||| | |||| || |||||| | |||||| | ||||| ||||| || Sbjct 28502 CGTCCCAGTCCTTCATGTCGCTGCCCAGGTCGATCTCCTCCATCGTCCAGAACGAGCTCT 28443 Query 133424 CGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGC 133483 |||| | |||||| | |||| ||||||| ||| ||||| || | ||| || ||| Sbjct 28442 CGGCCTCCTTGTACTTCTTCCAGATGTCCGGATAGGTGATGGGGAAGAGCACGAAGCGGT 28383 Query 133484 GGGGGTTTTCGCGCAACAGCGGCTC 133508 | |||||||| |||| ||||||||| Sbjct 28382 GAGGGTTTTCACGCAGCAGCGGCTC 28358 >seq781 Length=13536 Score = 107 bits (118), Expect = 2e-18 Identities = 157/217 (72%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || || || || || | | || |||||||| | Sbjct 13090 ATGCAGATCTTCGTGAAGACGCTGACCGGGAAGACGATTGCGCTTGAGGTCGAGGCGTCG 13149 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACC 38361 |||| | | |||| | || | || |||| ||||| ||||| || ||||||| ||| Sbjct 13150 GACACGATCGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCAT-CCCGCCGGACC 13207 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | || || || |||||||| || | ||||| || ||||||| Sbjct 13208 AGCAGCGCCTGATCTTTGCCGGGAAGCAGCTGGAGGAGGGCCGCACGCTTGCGGACTACA 13267 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||| ||||| |||||||||| | |||||||| Sbjct 13268 ACATCCAGAAGGAGTCGACGCTGCACCTCGTGCTGCG 13304 Score = 102 bits (112), Expect = 8e-17 Identities = 166/233 (71%), Gaps = 7/233 (3%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCA---TCACCGTCGACGTCGAGGCC 38300 ||||| || || ||||| |||||||| | || || | | | | || |||||||| Sbjct 12859 ATGCAGATCTTTGTAAAGACGCTCACAGACAGAAAGACGCTTGCGCTTGAGGTCGAGGCG 12918 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG- 38358 | |||| | | |||| | || | || |||| ||||| ||||| || ||||||| Sbjct 12919 TCGGACACGATCGAGAACG-TGAAGGCGAAGATCCAGGACAAGGAGGGCAT-CCCGCCGG 12976 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 |||| ||||| || || | || || || |||||||| || | ||||| || |||| Sbjct 12977 ACCAGCAGCGCCTGATCTTTGCCGGGAAGCAGCTGGAGGAGGGCCGCACGCTTGCGGACT 13036 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||||| ||||| |||||||||| | |||||||| || | |||||| Sbjct 13037 ACAACATCCAGAAGGAGTCGACGCTGCACCTCGTGCTGCGCCTGCGCGGCGGC 13089 >seq1639 Length=27095 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| ||||| || ||| | ||||| ||||| || || | ||| ||||| Sbjct 2818 AAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGCCTGATCTTCGCTGGCAAG 2877 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 |||||||| || | ||||| || |||||||||||||| ||||| | |||||||| Sbjct 2878 CAGCTGGAGGAGGGCCGCACGCTGGCTGACTACAACATCCAGAAGGAGTCCACGCTGCAC 2937 Query 38448 TTGGTGCTGCG 38458 | ||||| || Sbjct 2938 CTTGTGCTCCG 2948 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 38331 ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAG 38390 |||| ||||| ||||| || ||| | ||||| ||||| || || | ||| ||||| ||| Sbjct 4 ATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAG 63 Query 38391 CTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTG 38450 ||||| || | ||||| || |||||||||||||| ||||| | |||||||| | Sbjct 64 CTGGAGGAGGGCCGCACGCTGGCTGACTACAACATCCAGAAGGAGTCCACGCTGCACCTT 123 Query 38451 GTGCTGCG 38458 ||||| || Sbjct 124 GTGCTCCG 131 >seq1631 Length=42244 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACCAACAGCGGCTCATTTACGCGGGCAA 38386 || |||| ||||| ||||| || ||||||| |||| ||||| || || | |||||||| Sbjct 38183 AAGATCCAGGACAAGGAGGGCAT-CCCGCCGGACCAGCAGCGCCTGATCTTTGCGGGCAA 38241 Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446 |||||||| || | ||||| || |||||||||||||| ||||| ||||| |||| Sbjct 38242 GCAGCTGGAGGAGGGCCGCACGCTTGCGGACTACAACATCCAGAAGGAGTCGACGTTGCA 38301 Query 38447 TTTGGTGCTGCG 38458 | ||||| || Sbjct 38302 CCTCGTGCTCCG 38313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500158695127040