Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1968 118 8e-21 seq2119 116 3e-20 >seq1968 Length=6703 Score = 118 bits (130), Expect = 8e-21 Identities = 237/348 (68%), Gaps = 10/348 (3%) Strand=Plus/Minus Query 518013 TTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTA 518072 |||| || ||||| ||||||||| | ||||| || | || | || || ||| | | Sbjct 1121 TTACCAGGCGATTGTCAAAATCTGCTCCTCCTAAGTGGGTGTCACCGCTGGTGGCTTTGA 1062 Query 518073 CTTGGAAAAGTCCAT--CTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCAT 518130 ||| |||| | | | | | | ||||||||| |||||| || || || || | Sbjct 1061 CTTC--AAAGACGTTGGCGCCGATGGTCAAAAGAGTCACATCAAATGTGCCCCCTCCAAG 1004 Query 518131 ATCAAAAATAAGTACATTCA--TTTCT----TTGTCTTGGTTTTTATCAAGACCATACGC 518184 |||||| || || || | || | ||||| | |||||||||||||||| || Sbjct 1003 ATCAAAGATGAGCACGTCGCGCTTGCGATGATTGTCACCGATTTTATCAAGACCATAAGC 944 Query 518185 AAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCC 518244 || |||||| || || || || || ||||| || | || | |||||| ||||| || Sbjct 943 AACAGCAGCGGCTGTGGGCTCGTTCATAATACTAATCACCTCAAGACCCGCAATAGCCCC 884 Query 518245 TGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 518304 |||||||| |||||||| | ||| ||||| || || ||||| || || | |||||| Sbjct 883 GGCATCTTTGGTGGCTTGACGTTGGACGTCGTTGAAGTAGGCAGGCACCGTCACAACGGC 824 Query 518305 ATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTT 518352 | | ||||| || ||||| |||| ||| || ||||||||| Sbjct 823 TTTTTTGACTTCCTTTCCAATGTAAGTTTCTGCAGTGGCTTTCATTTT 776 Score = 111 bits (122), Expect = 1e-18 Identities = 264/396 (67%), Gaps = 10/396 (3%) Strand=Plus/Minus Query 518013 TTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTA 518072 |||| || ||||| ||||||||| | ||||| || | || | || || ||| | | Sbjct 520 TTACCAGGCGATTGTCAAAATCTGCTCCTCCTAAGTGGGTGTCACCGCTGGTGGCTTTGA 461 Query 518073 CTTGGAAAAGTCCAT--CTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCAT 518130 ||| |||| | | | | | | ||||||||| |||||| || || || || | Sbjct 460 CTTC--AAAGACGTTGGCGCCGATGGTCAAAAGAGTCACATCAAATGTGCCCCCTCCAAG 403 Query 518131 ATCAAAAATAAGTACATTCA--TTTCT----TTGTCTTGGTTTTTATCAAGACCATACGC 518184 |||||| || || || | || | ||||| | |||||||||||||||| || Sbjct 402 ATCAAAGATGAGCACGTCGCGCTTGCGATGATTGTCACCGATTTTATCAAGACCATAAGC 343 Query 518185 AAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCC 518244 || |||||| || || ||||| || ||||| || | || | |||||| ||||| || Sbjct 342 AACAGCAGCGGCTGTGGGTTCGTTCATAATACTAATCACCTCAAGACCCGCAATAGCCCC 283 Query 518245 TGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 518304 |||||||| |||||||| | ||| ||||| || || ||||| || || | |||||| Sbjct 282 GGCATCTTTGGTGGCTTGACGTTGGACGTCGTTGAAGTAGGCAGGTACTGTCACAACGGC 223 Query 518305 ATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCAT 518364 | ||||| || || || ||| ||| || ||||||||| | | | ||| Sbjct 222 TGTTTTGACTTCCTTCCCGATGTAACTTTCTGCAGTGGCTTTCATTTTCTTGAGCACCAT 163 Query 518365 TGATGAAATTTGTTCTGGGGAATATTGCTTGGATTC 518400 | ||| | ||| |||||| | |||| | ||| Sbjct 162 CGCACTAATCTCTTCAGGGGAAAAGCGCTTTGCTTC 127 >seq2119 Length=28796 Score = 116 bits (128), Expect = 3e-20 Identities = 444/696 (64%), Gaps = 6/696 (1%) Strand=Plus/Minus Query 518021 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 518080 || ||||||||||| ||||| || | | || | || | || || |||| | ||| Sbjct 7291 CGGTTATCAAAATCCTCACCACCAAGATGGGTGTCACCAGCGGTGGCCTTTACCTCGAAG 7232 Query 518081 AGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATA 518140 | || | || | | || ||| || ||||| || || ||||| | ||| ||||| Sbjct 7231 ATACCGTTGTCGATGGTCAGAAGCGTCACATCGAACGTACCGCCACCAAGATCGAAAATG 7172 Query 518141 AGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 518200 || || ||| || || || || || | || || |||| ||| |||||||| Sbjct 7171 AGGACGTTCTGCTCACCATCGGTCTTCTTGTCCATGCCGTAGGCAATAGCGGCAGCAGTG 7112 Query 518201 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 518260 || || || || || | || || | ||| || | ||| || ||||| || ||||| Sbjct 7111 GGCTCGTTGATGATGCGCAGCACTTCAAGGCCGGAAATGAGACCGGCATCCTTTGTGGCC 7052 Query 518261 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTA 518320 || | || || || || || || ||||| ||||| || ||||| | || || | | | Sbjct 7051 TGACGCTGGGAGTCATTGAAGTAGGCAGGGACAGTGATGACGGCCTTGGTGACCTTCTCA 6992 Query 518321 CCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCT 518380 || | || || || || | ||||| || | | ||| | ||| | ||| Sbjct 6991 CCGAGGTAGGCCTCAGCAGTCTCCTTCATCTTTTGCAGCACCATCGCGCTAATCTCTTCG 6932 Query 518381 GGGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACA 518440 |||| | ||||| ||||| || || | || | || || || | Sbjct 6931 GGGGCGAAGGTCTTGGTCTCATTCATGTACTCAACCTGAACAACGGGCTTG---CCCTCC 6875 Query 518441 TTAA---TAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAA 518497 || | | || || || ||||||| ||||| || ||||||| | |||| | || Sbjct 6874 TTGACGGTGACCTTGAAGGGCCAGTGCTTCATGTCAGATTGAAGATCGGGGTCGTCGAAC 6815 Query 518498 TCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGA 518557 | | |||||| | || || || || || | ||| ||||| || || || || | || Sbjct 6814 TTGCGACCAATCAGGCGCTTCGCGTCGAAGACAGTGTTGGTGGGGTTCATGGCGACCTGG 6755 Query 518558 TATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTT 518617 | ||||| ||||| |||| || | || | ||| || || |||||| || || || Sbjct 6754 TTCTTGGCCGCATCACCAACAAGGCGCTCGGACTCAGTGAAGCCAACATACGACGGGGTC 6695 Query 518618 GTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACA 518677 ||||| ||||| || ||||| |||||||| ||||| | | || | | ||||| || Sbjct 6694 GTGCGGTTACCCTGGTCATTGGCAATAATCTCAACCTGGTCGTTCTTGAAGACACCAACG 6635 Query 518678 CAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 518713 || | || || || |||||||||||||||||| Sbjct 6634 CAGGAGTAGGTAGTGCCCAAATCAATACCAATAGCA 6599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780710449848736