Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq564 273 3e-68 seq1779 132 6e-26 >seq564 Length=19258 Score = 273 bits (302), Expect = 3e-68 Identities = 1118/1739 (64%), Gaps = 50/1739 (3%) Strand=Plus/Plus Query 111622 TGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTTTTGGAGACAT 111681 |||| |||| |||||| |||||||||| | | || || | ||| |||||| | Sbjct 16628 TGTTGCTGCGTGTCGCGCTCGGTATCCACGTTGGTGACCTTCAACGTGTGAAGGAGACGT 16687 Query 111682 ACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTTCAACGCTGGTA 111741 |||| | | || | || ||||| ||||| || |||||||| ||||| || || | Sbjct 16688 ACGAACTGCTTTCTCAGGGCTGGTTCACGCACGCCACCCCAACCCTTTTCAATGCCGGCA 16747 Query 111742 CACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGATTCAATCAATG 111801 | || ||| || ||||| ||| |||||| | || | |||||||| || ||| | | Sbjct 16748 CTCCCCAACCGCAGATGTCGTCTTGCTTCCTTGTGGCGATGAAGGAGGACTCCATCGAAG 16807 Query 111802 GCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGGA 111861 |||| |||| || |||| || ||| | ||| ||| || ||||||||||| Sbjct 16808 GCATCTACGATACCCTCAAGCAAGCTGCTCGCATCAGCAAGGCTGCCGGTGGTATCGGCC 16867 Query 111862 TGCACATCCATGATGTCAGAGCCAACAAGTCTCGT--ATTAGAGGTACAAATGGTCAATC 111919 |||||||||| | || | | | | | ||| || || ||||| || || || Sbjct 16868 TGCACATCCACTGTATCCGCAGCTCC--GGCGCGTACATCAGTGGTACGAACGGCACGTC 16925 Query 111920 AGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGC 111979 | || || |||| | ||||| || | ||| ||| ||||| || || | || | Sbjct 16926 CAACGGCCTTGTTCCCCTTCTTCGTGTGTGGAACAACACCGCGCGTTACGTGGATCAGGG 16985 Query 111980 TG--GGC-GTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCAT 112036 || ||| |||||||| | ||||||| || || ||||| ||||||| || || | Sbjct 16986 TGGCGGCAAGCGCAAGGGTGCGTTCGCAGTGTACCTGGAGCCGTGGCACGGAGACATTTT 17045 Query 112037 GGAGTTC---CTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGC-CGCGATC 112092 || ||| ||| | ||| |||| || | || || || |||| || || Sbjct 17046 TGACTTCTTACTTCTGAAGCG---CAACACTGGCAAGGATGAACAGC-GTGCTCGAGACT 17101 Query 112093 TCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATT 112152 | |||| || || ||||| || || | ||||||||| | ||||| ||| | || | Sbjct 17102 TGTTCTACGGGCTTTGGATCCCTGACTTGTTCATGAAGCGTGTTGAAAAGAACGAGAAGT 17161 Query 112153 GGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGGAGTTTG 112212 || ||||| | || || || ||||| ||| | ||| | || || ||||| | Sbjct 17162 GGACTCTCATGGACCCCAACTCCGCTCCCGGCCTCGCTGATTGCTATGGCGATGAGTTCG 17221 Query 112213 AAGCCCTCTACACAAAG-TACGAGGAAGAAAGTCGGGCGACTGCGACGGTGCCAGCTGCC 112271 | || | ||| || | |||||| || | || | | | ||| | | ||| Sbjct 17222 AGGCGTTGTAC-CAGCGCTACGAGACTGAGGGCCGCGGTATTAAGACCATTCAAGCCCAA 17280 Query 112272 GATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTAC 112331 || ||||| || || || ||||||| | || || || || || || ||| | ||| Sbjct 17281 GAACTGTGGTTCGCGATCCTTGAGTCTCAGATTGAAACCGGCACCCCCTACATGTTGTAC 17340 Query 112332 AAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAAC 112391 || || || || ||| | ||||| || |||||||| ||||| ||| ||| | |||||| Sbjct 17341 AAGGATGCTTGCAACAAGAAGAGCAACCAAAAGAACTTGGGCACGATTAAGTGCTCCAAC 17400 Query 112392 CTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCA 112451 ||||| ||||| || | || | || | || ||| |||||||| ||||| || Sbjct 17401 CTCTGCACAGAGATTGTTGAGTACACGTCCCCGGACGAGGTTGCTGTGTGCAACCTTGCG 17460 Query 112452 TCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTC 112511 || || || || || ||| ||| | | |||||| | || ||| || | | Sbjct 17461 TCGATTGCACTTCCTCGGTACGTGAACCTTGAGACAGGAAAGTTCGATCATCAGCGTTTG 17520 Query 112512 CACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTAC 112571 ||||||| || || || || ||| | |||| ||| |||||| | || || ||| Sbjct 17521 TACGAAGTCACAAAGACGGTAGTGGTGAACTTGAACAAAGTGATTGATCGCAACTTCTAC 17580 Query 112572 CCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAA 112631 ||||| || || || || | | || || || |||| || || || || Sbjct 17581 CCCGTCGAAGAGGCCCGCCGCAGCAACTTCCGCCATCGCCCTGTTGGCCTTGGAGTTCAG 17640 Query 112632 GGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAA 112691 || | ||||| | ||||| || |||| | || | | |||||| || | Sbjct 17641 GGCTTGGCGGACGCGTTCATCCTCATGCGCCTTCCCTTCGCGAGCCCCGAAGCTCAGAAG 17700 Query 112692 ATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTG 112751 | || | | || || |||||||| || |||| | ||||| | || | || | Sbjct 17701 TTGAACGAGGAGATCTTCGAGACAATCTACTACGCGGGCCTTGAATCCAGCTGCGACATC 17760 Query 112752 GCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTT 112811 || | || || || || |||||||| || | || ||||| || || ||||| | ||| Sbjct 17761 GCCGCAGTGGACGGCCCGTATGAAACGTTCGCCGGATCTCCTGCGTCCCAAGGCATTCTT 17820 Query 112812 CAATTTGATATGTGGG--AAGGTGAGACCAAGC-TTCACTACGACTGGGACGCTCTCAAG 112868 || || || ||||||| ||| | | | ||| | || ||||||| | | |||||| Sbjct 17821 CAGTTCGACATGTGGGGTAAGCAGCCAACCAGCGGCCGCTGGGACTGGGCCTCCCTCAAG 17880 Query 112869 GAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCC 112928 || || | || ||| | || ||| ||| | | || |||||||| || || Sbjct 17881 GAGCGTGTGCAGCGTGTCGGTATCCGCAACTCCCTTCTCCTCGCCCCAATGCCCACCGCA 17940 Query 112929 TCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTAT 112988 |||||| | || ||| | || || || || ||||| ||||||| ||| |||||||||| Sbjct 17941 TCCACCTCCCAGATCCTCGGCAACAACGAGTGCTTCGAACCCTTCACCTCGAACATCTAC 18000 Query 112989 CTGAGAAGAACCCTCGCGGGAGAGTT---TGTGATTGTCAACAAGCATCTCGTGGATGAC 113045 || | | ||| || ||||| ||| | |||||||| | || |||| ||| Sbjct 18001 CTTCGCCGTGTGCTCAGCGGTGAGTTCCCTGTCA---TCAACAAGTACCTTGTGGTGGAC 18057 Query 113046 CTCAAAGAGATTGGTCTCTGGTCCAAGGATAT---GAAGGATCTCAT-GGTGAAAGCGGG 113101 |||| || ||| || ||| || ||||||| || | |||| ||| ||| Sbjct 18058 CTCATCAAGCGTGGGCTGTGGACCGAGGATATTCGCAACCAGATCATCGGT----GCGAA 18113 Query 113102 TGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGA-AGTTGTACCGCACAG 113160 || ||| ||||| || || | ||| | || | | ||| || ||||| | | Sbjct 18114 CGGCTCCGTTCAAGGGATCAACGA-AATCCCGCTGGAGCTCAGAGAGCTGTACAAGATCG 18172 Query 113161 TTTGGGAAAT----CAAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTCGCTTC 113216 | |||||||| ||| ||||| ||||||||||||||||| ||||| | | Sbjct 18173 TGTGGGAAATTCGCCAA----AAGGACCTCATTGACATGGCCGCATCCCGTGGCAAGTAC 18228 Query 113217 ATTGATCAAAGTCAAAGTATGAATCTATTCATGGAAAGTCCAACGATGTC---CAAGCTC 113273 ||||||||| ||| ||| ||||| ||||| | | ||||| | | ||| | | ||| Sbjct 18229 ATTGATCAATCTCAGAGTTTGAATTTATTCCTCG--AGTCC-CCCAAGTCAAGCCAACTC 18285 Query 113274 TCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACCTCCG 113332 | || |||||| | |||| ||||||| | || || || || || ||||| ||||| || Sbjct 18286 ACATCGATGCACTTTTACACTTGGAAGCAAGGACTGAAGACTGGTATGTACTACCTGCG 18344 >seq1779 Length=53708 Score = 132 bits (146), Expect = 6e-26 Identities = 177/246 (72%), Gaps = 9/246 (4%) Strand=Plus/Plus Query 102078 GAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGAT 102137 |||||| ||| || ||||| || ||| | || |||| || || || ||| ||||| Sbjct 28715 GAGAAGCAGCGCCTGTTTGAGGCGATCGAGACGATTCCCTGCATCCAGCGGAAGGCGGAG 28774 Query 102138 TGGGCTATGAAGTGGTTTGATACAAAGTCGCGT---TCCTTTGCTGAGCGACTCTTCGCA 102194 ||||| ||| ||| | |||||| ||||| || ||||| ||| | || Sbjct 28775 TGGGCCATGCGCTGGATC------AAGTCGACAACCTCCTTCGCCGAGCGCCTCGTTGCG 28828 Query 102195 TTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAG 102254 || || |||||||| |||||||| || || ||||||| | || | ||||| ||| Sbjct 28829 TTCGCCGCGGTTGAGGGCATCTTCTTTTCCGGCAGCTTCTGCTCCATCTTCTGGCTGAAG 28888 Query 102255 AAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGA 102314 ||||| || || ||||| || ||| ||||||||||||||| ||||| ||||||||||| Sbjct 28889 AAGCGCGGCCTGATGCCTGGCCTCACCTTCTCCAACGAGCTGATCTCGCGTGACGAGGGC 28948 Query 102315 CTCCAC 102320 |||||| Sbjct 28949 CTCCAC 28954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620724895064320