Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bodo_20saltans_20[genbank_20GCA_5F001460835.1_202015-11-25] 2,256 sequences; 39,864,394 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq564 185 1e-41 seq1779 122 1e-22 seq970 84.2 3e-11 >seq564 Length=19258 Score = 185 bits (204), Expect = 1e-41 Identities = 1040/1653 (63%), Gaps = 34/1653 (2%) Strand=Plus/Minus Query 109407 GCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGA 109466 ||| || || |||||||| || || || || |||||| | ||| | ||||| || | Sbjct 18345 GCGCAGGTAGTACATACCAGTCTTCAGTCCTTGCTTCCAAGTGTAAAAGTGCATCGATGT 18286 Query 109467 GAGTTTGGA--AAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATG 109524 ||||| | | || |||||| | || || |||| |||||| ||||| ||| Sbjct 18285 GAGTTGGCTTGACTTGGGGGACTCG--AGGAATAAATTCAAACTCTGAGATTGATCAATG 18228 Query 109525 AATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTC 109584 | ||||| || |||||||| |||| |||||||| ||||||||| || || Sbjct 18227 TACTTGCCACGGGATGCGGCCATGTCAATGAGGTCCTTTTGGCGAATTTCCCACACGATC 18168 Query 109585 TTGTACAAATTCTTGATATC-ATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGC 109643 ||||||| | ||| || | ||||| | || ||| ||||| ||||| || Sbjct 18167 TTGTACAGCTCTCTGAGCTCCAGCGGGATT-TCGTTGATCCCTTGAACGGAGCCGTTCGC 18109 Query 109644 CTTCACC-ATGAGATCCTTC---ATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGT 109699 ||| |||| | || || || | | ||| || || ||| |||| || Sbjct 18108 ----ACCGATGATCTGGTTGCGAATATCCTCGGTCCACAGCCCACGCTTGATGAGGTCCA 18053 Query 109700 CAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGT 109759 | ||||| | |||||||| || || ||||| || || || |||||||||| Sbjct 18052 CCACAAGGTACTTGTTGATGACAGGGAACTCACCGCTGAGCACACGGCGAAGGTAGATGT 17993 Query 109760 TAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGG 109819 | | ||| |||||||||| ||||| |||||||| ||||| || | ||||| || |||| Sbjct 17992 TCGAGGTGAAGGGTTCGAAGCACTCGTTGTTGCCGAGGATCTGGGAGGTGGATGCGGTGG 17933 Query 109820 GCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTG 109879 |||| || || | |||||| ||| |||| ||| || || ||||| | | Sbjct 17932 GCATTGGGGCGAGGAGAAGGGAGTTGCGGATACCGACACGCTGCACACGCTCCTTGAGGG 17873 Query 109880 CGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTA 109939 | |||| || | || || || | || ||| |||||| || ||||| | Sbjct 17872 AGGCCCAGTCCCAGCGGCCGCTGGTTGGCTGCTTACC---CCACATGTCGAACTGAAGAA 17816 Query 109940 CACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACT 109999 || | | |||||||| || ||| | || |||| || || || |||| | | Sbjct 17815 TGCCTTGGGACGCAGGAGATCCGGCGAACGTTTCATACGGGCCGTCCACTGCGGCGATGT 17756 Query 110000 CGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGGC 110059 || | | || || |||| | || || ||||| || || | | |||| Sbjct 17755 CGCAGCTGGATTCAAGGCCCGCGTAGTAGATTGTCTCGAAGATCTCCTCGTTCAACTTCT 17696 Query 110060 GAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCGCTAGACCCTGAA 110119 ||| || | |||||||||| | || || ||| | ||||| | ||||||| Sbjct 17695 GAGCTTCGGGGCTCGCGAAGGGAAGGCGCATGAGGATGAACGCGTCCGCCAAGCCCTGAA 17636 Query 110120 CACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAA 110179 | || || |||| |||||||| | ||| ||| || || ||| |||||||| | Sbjct 17635 CTCCAAGGCCAACAGGGCGATGGCGGAAGTTGCTGCGGCGGGCCTCTTCGACGGGGTAGA 17576 Query 110180 AGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTT 110239 ||||||| || || || || | ||| | || ||||| |||| ||| | | Sbjct 17575 AGTTGCGATCAATCACTTTGTTCAAGTTCACCACTACCGTCTTTGTGACTTCGTACAAAC 17516 Query 110240 TGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATAGACGCAA 110299 | | ||||||| || ||||| || || || || || ||||| ||||||| Sbjct 17515 GCTGATGATCGAACTTTCCTGTCTCAAGGTTCACGTACCGAGGAAGTGCAATCGACGCAA 17456 Query 110300 GATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGG 110359 | |||||||||| | |||||| | ||||| || | ||| || || || | ||||| Sbjct 17455 GGTTGCACACAGCAACCTCGTCCGGGGACGTGTACTCAACAATCTCTGTGCAGAGGTTGG 17396 Query 110360 AACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGA 110419 | | |||||| ||||||||||| || || || |||||| |||||||| || | Sbjct 17395 AGCACTTAATCGTGCCCAAGTTCTTTTGGTTGCTCTTCTTGTTGCAAGCATCCTTGTACA 17336 Query 110420 GCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGGCGG 110479 |||||| ||||| || ||||| |||| |||| || || || ||| | || || Sbjct 17335 ACATGTAGGGGGTGCCGGTTTCAATCTGAGACTCAAGGATCGCGAACCACAGTTCTTGGG 17276 Query 110480 CGGGGACAGTTGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATT 110539 | | | || || || | || || |||||| |||||| |||| || | Sbjct 17275 CTTGAATGGTCTTAATACCGCGGCCCTCAGTCTCGTAGCGCTGGTACAACGCCTCGAACT 17216 Query 110540 CCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTC 110599 | | || || ||||| || || || || ||| | ||| | ||| || Sbjct 17215 CATCGCCATAGCAATCAGCGAGGCCGGGAGCGGAGTTGGGGTCCATGAGAGTCCACTTCT 17156 Query 110600 CACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCAC 110659 | || ||||| | ||||||||||| |||||| ||||| | | | |||| | ||| | Sbjct 17155 CGTTCTTTTCAACACGCTTCATGAACAAGTCAGGGATCCAAAGCCCGTAGAACAAGTCTC 17096 Query 110660 GGCAACGAGCCTCTTCATCACCTTG-----GTTGAGGCGTAGCTCCAAAAAGTCCATGAT 110714 | ||| || ||||| ||||| |||| | || || ||||| | || Sbjct 17095 GAGCACG---CTGTTCAT--CCTTGCCAGTGTTGCGCTTCAGAAGTAAGAAGTCAAAAAT 17041 Query 110715 ATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG---ACGACCCGCCTG 110771 || |||||| || || || || || |||| | ||||| || | || |||| Sbjct 17040 GTCTCCGTGCCACGGCTCCAGGTACACTGCGAACGCACCCTTGCGCTTGCCGCCACCCTG 16981 Query 110772 GTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTG 110831 | || || || || ||| || | || | || | |||| || || | ||| Sbjct 16980 ATCCACGTAACGCGCGGTGTTGTTCCACACACGAAGAAGGGGAACAAGGCCGTTGGACGT 16921 Query 110832 ACCATTTGTACCCCTAA--TTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCA 110889 || || ||||| || | | | | | | | || || |||||| |||| || Sbjct 16920 GCCGTTCGTACCACTGATGTACGCGCCGGA--GCTGCGGATACAGTGGATGTGCAGGCCG 16863 Query 110890 ATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCA 110949 |||||||| || ||| || || | ||| | |||| ||| | || || || || Sbjct 16862 ATACCACCGGCAGCCTTGCTGATGCGAGCAGCTTGCTTGAGGGTATCGTAGATGCCTTCG 16803 Query 110950 ATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCC 111009 || || || |||| | || | || |||||||| |||||||| || | || || || Sbjct 16802 ATGGAGTCCTCCTTCATCGCCACAAGGAAGCAAGACGACATCTGCGGTTGGGGAGTGCCG 16743 Query 111010 GCATTGAAGAGTGTAGGTGTCGCATGAATGAAC 111042 |||||||| || || || || || || ||||| Sbjct 16742 GCATTGAAAAGGGTTGGGGTGGCGTGCGTGAAC 16710 >seq1779 Length=53708 Score = 122 bits (134), Expect = 1e-22 Identities = 365/549 (66%), Gaps = 17/549 (3%) Strand=Plus/Minus Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267 || || || ||| |||| |||||||| |||||||| || | || ||||| | ||||| Sbjct 29256 TACTCGCCGACCTTCTTCTCGAAGAAGTTCGTCTTGCCTTGAAGGGAGATCATCTCCATG 29197 Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAGATTGGTGGTTGACCAA-CTTGTTTCAGAAGACG 119326 ||||| || || || |||| | | || | || |||| | || | ||| ||||| Sbjct 29196 AAGTCGAAGGGGTTCTTGGCGCCGAAAATCGTCTCGTGGCCAAGCGTGAT-CAGCAGACG 29138 Query 119327 ATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTACA 119386 || | || ||||||| || | || |||| || || ||||| || || ||| || Sbjct 29137 GTCCGCAACGAACTCGATGTACTGGGCCATCAGATCGGAGTTCATTCCGATCAGACG-CA 29079 Query 119387 CGGG-AGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGAGT 119445 |||| || || ||| |||||| | |||||||||| |||| || || | ||| | Sbjct 29078 CGGGGAGCGCGTCGCAGATGAACTCCTTCTCGATCGCCACGGCGTCGCCAATGATCTCGC 29019 Query 119446 GAATAGTTTCTGTCGATG-GTTTGTTTCTCAAGAGTTTAA---ACAAC-TCTACGGCAAA 119500 | || || ||| | | ||||| || | || ||| | | ||| || Sbjct 29018 GGATGCGCTCC-TCGCTCAGCTTGTTCACCAGGTACTTCTCGTACAGCATGCACGCGAAG 28960 Query 119501 TTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCAT 119560 | || || ||||| | || || ||||| ||||| || |||| || |||||||| Sbjct 28959 TCGGTGTGGAGGCCCT-CGTCACGCGAGATCAGCTCGTTGGAGAAGGTGAGGCCAGGCAT 28901 Query 119561 GAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTC 119620 || || | ||||| ||||| ||||||| || || || || ||||||||||||||||| Sbjct 28900 CAGGCCGCGCTTCTTCAGCCAGAAGATGGAGCAGAAGCTGCCGGAAAAGAAGATGCCCTC 28841 Query 119621 CACACAGGCGAAAGCGAATAGACGCTCAGCAAA--AGGTCG-AGACTTGTCGAACCACTT 119677 || |||||| || | || ||||| || || |||| | ||||| || ||| Sbjct 28840 AACCGCGGCGAACGCAACGAGGCGCTCGGCGAAGGAGGTTGTCGACTT---GATCCAGCG 28784 Query 119678 GAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTG 119737 | ||||| | ||||| |||| |||||||| | || | ||| || || || || | Sbjct 28783 CATGGCCCACTCCGCCTTCCGCTGGATGCAGGGAATCGTCTCGATCGCCTCAAACAGGCG 28724 Query 119738 CTTCTTTTC 119746 || ||| || Sbjct 28723 CTGCTTCTC 28715 >seq970 Length=2018 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 136712 TCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCC 136771 ||| |||||||||| ||||||||||||| || |||| |||||||||| ||||||| || Sbjct 682 TCTCATAGCTCAGTCGGTTAGAGCGTGGGTCTAATAAGCCCAAGGTCACAGGTTCGACCC 741 Query 136772 CCGTTGGGAACAGCTTTT 136789 | ||||||| || ||||| Sbjct 742 CTGTTGGGAGCA-CTTTT 758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588959390876800